JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCTE1_chr6_44273734_44302698	0/0	t0063	1565	1	1	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0064	1563	1	1	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0065	1577	1	1	0	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0066	1598	1	0	1	0	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0067	1584	1	0	0	1	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0068	1583	1	0	0	0	0	1	copy fasta	TCTE1	chr6	44273734	44302698
TCTE1_chr6_44273734_44302698	0/0	t0069	1579	1	0	0	1	0	0	copy fasta	TCTE1	chr6	44273734	44302698
TCTN1_chr12_110609129_110654430	1/1	t0001	443	283	85	62	86	16	32	copy fasta	TCTN1	chr12	110609129	110654430
TCTN1_chr12_110609129_110654430	0/0	t0002	443	1	1	0	0	0	0	copy fasta	TCTN1	chr12	110609129	110654430
TCTN2_chr12_123666113_123713399	1/1	t0001	815	95	24	19	29	10	11	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0002	819	35	5	12	6	6	6	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0003	819	26	9	2	7	1	7	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0004	819	14	13	1	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0005	819	9	4	3	0	0	2	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0006	818	8	7	1	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0007	819	6	6	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0008	818	6	6	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0009	820	5	2	3	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0010	820	5	1	1	1	0	2	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0011	816	5	1	1	2	0	1	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0012	820	5	5	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0013	820	2	2	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0014	820	2	0	0	0	0	2	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0015	819	2	2	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0016	820	2	0	1	1	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0017	819	1	0	0	0	1	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0018	819	1	1	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0019	818	1	1	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0020	814	1	0	0	0	0	1	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0021	819	1	1	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0022	819	1	0	1	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0023	815	1	0	1	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0024	820	1	1	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN2_chr12_123666113_123713399	0/0	t0025	818	1	1	0	0	0	0	copy fasta	TCTN2	chr12	123666113	123713399
TCTN3_chr10_95658401_95698927	1/1	t0001	695	348	73	52	171	14	36	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	t0002	695	43	7	25	5	4	2	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	t0003	695	5	5	0	0	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	t0004	695	2	2	0	0	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	t0005	695	1	1	0	0	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TCTN3_chr10_95658401_95698927	0/0	t0006	714	1	0	1	0	0	0	copy fasta	TCTN3	chr10	95658401	95698927
TDGF1P3_chrX_110515896_110528021	1/1	t0001	1560	180	29	29	100	4	16	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0002	1562	64	39	10	3	7	5	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0003	1559	5	1	1	1	0	2	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0004	1561	3	1	1	1	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0005	1561	3	2	1	0	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0006	1560	2	0	0	2	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0007	1561	2	1	0	0	0	1	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0008	1558	1	0	0	1	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0009	1560	1	0	0	1	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0010	1560	1	1	0	0	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021