JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TDGF1P3_chrX_110515896_110528021	0/0	t0011	1560	1	0	0	1	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0012	1562	1	0	1	0	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1P3_chrX_110515896_110528021	0/0	t0013	1561	1	0	0	1	0	0	copy fasta	TDGF1P3	chrX	110515896	110528021
TDGF1_chr3_46572788_46587457	1/1	t0001	1390	134	38	29	50	5	10	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0002	1390	97	17	11	61	1	7	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0003	1390	56	5	11	22	5	13	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0004	1389	53	17	11	16	3	6	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0005	1390	34	1	10	14	1	8	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0006	1390	16	0	0	16	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0007	1392	12	0	0	11	1	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0008	1391	6	0	2	3	0	1	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0009	1390	4	4	0	0	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0010	1391	4	0	0	4	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0011	1391	4	1	0	1	0	2	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0012	1391	4	4	0	0	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0013	1390	3	0	0	3	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0014	1390	3	0	0	3	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0015	1390	3	0	0	3	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0016	1390	1	0	0	1	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0017	1389	1	0	0	1	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0018	1389	1	0	0	1	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0019	1390	1	1	0	0	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0020	1390	1	1	0	0	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0021	1390	1	1	0	0	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0022	1390	1	0	0	0	0	1	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0023	1390	1	1	0	0	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0024	1390	1	1	0	0	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0025	1391	1	0	0	1	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDGF1_chr3_46572788_46587457	0/0	t0026	1390	1	0	0	1	0	0	copy fasta	TDGF1	chr3	46572788	46587457
TDG_chr12_103960872_103993874	0/1	t0001	1953	262	42	44	133	10	32	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0002	1953	85	1	10	69	2	3	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	1/0	t0003	1951	32	20	7	0	2	2	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0004	1953	17	9	2	1	0	5	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0005	1946	16	16	0	0	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0006	1953	12	4	6	0	2	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0007	1953	8	1	0	0	0	7	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0008	1953	3	2	0	0	1	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0009	1953	1	0	0	1	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0010	1953	1	0	0	1	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0011	1953	1	0	0	0	0	1	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0012	1953	1	0	0	0	1	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0013	1953	1	0	0	1	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0014	1953	1	0	1	0	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0015	1953	1	0	1	0	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0016	1953	1	1	0	0	0	0	copy fasta	TDG	chr12	103960872	103993874
TDG_chr12_103960872_103993874	0/0	t0017	1951	1	0	1	0	0	0	copy fasta	TDG	chr12	103960872	103993874
TDO2_chr4_155898696_155925406	0/1	t0001	480	375	90	76	146	16	46	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	t0002	480	1	1	0	0	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDO2_chr4_155898696_155925406	0/0	t0003	480	1	1	0	0	0	0	copy fasta	TDO2	chr4	155898696	155925406
TDP1_chr14_89950927_90049764	1/0	t0001	1896	119	32	29	42	3	12	copy fasta	TDP1	chr14	89950927	90049764