JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TDP1_chr14_89950927_90049764	0/1	t0002	1896	52	2	14	30	0	5	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0003	1896	22	13	1	4	0	4	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0004	1895	19	5	4	6	1	3	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0005	1897	12	9	3	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0006	1896	9	8	1	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0007	1895	8	8	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0008	1896	3	3	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0009	1897	3	3	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0010	1895	3	3	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0011	1896	2	0	0	2	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0012	1896	2	2	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0013	1895	2	2	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0014	1896	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0015	1896	1	0	1	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0016	1896	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0017	1896	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0018	1895	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0019	1896	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0020	1896	1	0	1	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP1_chr14_89950927_90049764	0/0	t0021	1895	1	1	0	0	0	0	copy fasta	TDP1	chr14	89950927	90049764
TDP2_chr6_24644979_24671899	0/1	t0001	847	260	38	45	144	8	24	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	1/0	t0002	847	65	11	14	25	4	10	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0003	847	39	25	5	9	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0004	847	15	0	7	1	4	3	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0005	847	11	9	1	1	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0006	847	8	1	3	0	1	3	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0007	847	7	1	1	4	1	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0008	847	3	3	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0009	847	2	2	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0010	847	2	2	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0011	847	2	0	0	2	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0012	847	1	1	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0013	847	1	1	0	0	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0014	847	1	0	0	1	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDP2_chr6_24644979_24671899	0/0	t0015	847	1	0	0	1	0	0	copy fasta	TDP2	chr6	24644979	24671899
TDRD10_chr1_154497219_154553147	0/1	t0001	1276	156	14	38	80	7	16	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	1/0	t0002	1276	134	40	23	52	3	15	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0003	1276	17	17	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0004	1276	7	7	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0005	1276	4	4	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0006	1276	3	3	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0007	1276	1	0	0	0	0	1	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0008	1276	1	0	1	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0009	1276	1	0	0	0	0	1	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0010	1276	1	0	1	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0011	1276	1	0	0	0	0	1	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0012	1276	1	0	0	1	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0013	1276	1	1	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0014	1276	1	1	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0015	1276	1	0	1	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147