JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TDRD10_chr1_154497219_154553147	0/0	t0016	1276	1	1	0	0	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD10_chr1_154497219_154553147	0/0	t0017	1276	1	0	0	1	0	0	copy fasta	TDRD10	chr1	154497219	154553147
TDRD12_chr19_32714767_32834580	0/0	t0001	2613	82	14	13	46	1	8	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	1/1	t0002	2620	70	8	17	29	2	12	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0003	2630	57	0	8	42	2	5	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0004	2634	34	0	1	31	0	2	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0005	2631	28	19	1	3	0	5	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0006	2629	12	0	1	9	0	2	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0007	2632	9	8	0	0	1	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0008	2621	8	2	1	4	1	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0009	2621	7	7	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0010	2635	7	1	1	5	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0011	2613	6	0	0	6	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0012	2620	6	1	0	3	0	2	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0013	2621	5	5	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0014	2630	5	1	1	1	1	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0015	2619	5	1	0	1	1	2	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0016	2631	3	3	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0017	2633	3	3	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0018	2634	3	2	1	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0019	2620	3	3	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0020	2621	2	0	0	1	1	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0021	2620	2	2	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0022	2631	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0023	2620	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0024	2620	1	0	1	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0025	2632	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0026	2620	1	0	1	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0027	2631	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0028	2631	1	0	0	0	0	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0029	2633	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0030	2634	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0031	2633	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0032	2634	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0033	2613	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0034	2613	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0035	2613	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0036	2617	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0037	2613	1	0	0	0	0	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0038	2620	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0039	2616	1	0	1	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0040	2616	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0041	2616	1	0	0	1	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0042	2620	1	0	0	0	0	1	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0043	2620	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD12_chr19_32714767_32834580	0/0	t0044	2620	1	1	0	0	0	0	copy fasta	TDRD12	chr19	32714767	32834580
TDRD15_chr2_21118968_21149368	1/1	t0001	1376	291	84	55	113	10	27	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0002	1376	20	0	0	19	0	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0003	1376	19	1	3	12	2	1	copy fasta	TDRD15	chr2	21118968	21149368
TDRD15_chr2_21118968_21149368	0/0	t0004	1376	6	0	0	6	0	0	copy fasta	TDRD15	chr2	21118968	21149368