JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TDRD3_chr13_60392220_60578871	0/0	t0006	411	3	1	1	0	1	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	t0007	412	2	0	0	2	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	t0008	412	1	1	0	0	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	t0009	412	1	0	0	1	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	t0010	411	1	1	0	0	0	0	copy fasta	TDRD3	chr13	60392220	60578871
TDRD3_chr13_60392220_60578871	0/0	t0011	411	1	0	0	0	0	1	copy fasta	TDRD3	chr13	60392220	60578871
TDRD5_chr1_179586832_179696272	1/1	t0001	638	253	81	44	98	9	19	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	t0002	638	107	5	27	58	4	13	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	t0003	638	17	0	5	11	1	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	t0004	638	4	4	0	0	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD5_chr1_179586832_179696272	0/0	t0005	644	1	0	0	1	0	0	copy fasta	TDRD5	chr1	179586832	179696272
TDRD6_chr6_46682885_46709319	0/0	t0001	2677	248	49	40	120	9	30	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0002	2677	53	0	10	31	2	10	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0003	2677	39	3	13	17	3	3	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0004	2677	15	15	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0005	2677	10	0	4	6	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0006	2677	8	7	1	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0007	2677	7	0	0	7	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0008	2677	6	6	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0009	2677	4	4	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0010	2677	3	0	0	3	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0011	2677	2	0	2	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0012	2677	2	2	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0013	2677	2	0	2	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0014	2677	2	0	0	0	1	1	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0015	2677	1	0	0	0	0	1	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0016	2677	1	0	1	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0017	2677	1	0	1	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0018	2677	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0019	2677	1	0	0	0	0	1	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0020	2677	1	0	0	0	1	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0021	2677	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0022	2703	1	0	0	1	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD6_chr6_46682885_46709319	0/0	t0023	2677	1	1	0	0	0	0	copy fasta	TDRD6	chr6	46682885	46709319
TDRD7_chr9_97407096_97501125	1/1	t0001	392	334	83	66	139	6	38	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	t0002	392	14	2	4	8	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	t0003	392	7	0	0	7	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD7_chr9_97407096_97501125	0/0	t0004	392	1	1	0	0	0	0	copy fasta	TDRD7	chr9	97407096	97501125
TDRD9_chr14_103923456_104057667	0/1	t0001	639	175	26	33	86	8	21	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	t0002	639	141	37	30	56	7	11	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	t0003	640	21	17	4	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	t0004	639	17	1	3	10	3	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	t0005	639	5	5	0	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	t0006	639	5	0	0	5	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	t0007	639	4	0	0	4	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	t0008	639	2	0	2	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	0/0	t0009	639	1	0	0	1	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRD9_chr14_103923456_104057667	1/0	t0010	640	1	0	0	0	0	0	copy fasta	TDRD9	chr14	103923456	104057667
TDRKH_chr1_151768494_151795500	1/1	t0001	1107	237	57	40	112	7	19	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	t0002	1107	110	18	21	44	6	21	copy fasta	TDRKH	chr1	151768494	151795500