Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRAF_chr7_140725665_140929929	0/0	t0028	4146	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0029	4157	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0030	4144	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0031	4134	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0032	4134	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0033	4159	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0034	4145	1	0	0	1	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0035	4136	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0036	4137	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0037	4136	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0038	4135	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0039	4159	1	0	1	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0040	4159	1	0	1	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0041	4137	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0042	4138	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0043	4144	1	0	0	0	0	1	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0044	4144	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0045	4156	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0046	4157	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0047	4141	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0048	4159	1	0	0	0	0	1	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0049	4159	1	0	0	1	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0050	4171	1	0	0	1	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0051	4174	1	0	0	1	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0052	4135	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0053	4158	1	0	0	0	0	1	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0054	4181	1	0	0	0	0	1	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0055	4136	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0056	4137	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0057	4136	1	0	0	0	0	1	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0058	4136	1	0	0	1	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0059	4144	1	0	0	1	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0060	4139	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0061	4136	1	0	1	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAP_chr12_111637146_111690956	0/1	t0001	2218	346	81	60	155	8	41	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	t0002	2218	8	7	1	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	t0003	2218	2	0	0	2	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	t0004	2218	1	0	0	1	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	t0005	2218	1	0	0	0	0	1	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	1/0	t0006	2218	1	0	0	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	t0007	2218	1	1	0	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	t0008	2218	1	1	0	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	t0009	2218	1	0	0	1	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	t0010	2218	1	0	1	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	t0011	2218	1	0	0	1	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAT1_chr7_2532810_2560524	1/0	t0001	314	359	85	54	177	11	31	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/1	t0002	314	27	0	20	1	3	2	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	t0003	314	26	6	3	15	0	2	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	t0004	314	6	1	0	1	0	4	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	t0005	314	4	4	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524