JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TDRKH_chr1_151768494_151795500	0/0	t0003	1107	58	15	13	23	4	3	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	t0004	1107	4	0	0	4	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	t0005	1107	2	2	0	0	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	t0006	1107	2	2	0	0	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	t0007	1107	1	1	0	0	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	t0008	1107	1	0	0	0	0	1	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	t0009	1107	1	1	0	0	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	t0010	1107	1	0	0	0	1	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRKH_chr1_151768494_151795500	0/0	t0011	1107	1	0	0	1	0	0	copy fasta	TDRKH	chr1	151768494	151795500
TDRP_chr8_484946_549834	0/0	t0001	2531	68	2	5	49	5	7	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0002	2531	53	6	9	31	3	4	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/1	t0003	2531	50	2	7	33	0	7	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	1/0	t0004	2531	30	0	18	2	3	6	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0005	2531	22	17	2	3	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0006	2531	19	6	0	11	0	2	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0007	2531	14	0	1	9	0	4	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0008	2531	14	0	0	14	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0009	2531	10	8	1	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0010	2531	8	0	6	2	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0011	2531	8	2	1	4	0	1	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0012	2531	8	0	0	8	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0013	2531	7	0	6	0	0	1	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0014	2531	7	4	1	0	2	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0015	2531	6	2	4	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0016	2531	5	4	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0017	2531	5	2	1	0	1	1	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0018	2531	4	0	3	0	0	1	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0019	2531	4	0	2	0	1	1	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0020	2531	4	3	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0021	2531	4	4	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0022	2531	4	0	1	2	0	1	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0023	2531	4	0	0	4	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0024	2531	4	3	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0025	2531	3	3	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0026	2531	3	0	0	3	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0027	2531	3	0	1	0	0	2	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0028	2531	3	0	0	3	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0029	2531	3	3	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0030	2531	3	1	2	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0031	2532	3	3	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0032	2531	3	3	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0033	2531	3	0	0	3	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0034	2532	2	2	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0035	2531	2	0	0	2	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0036	2531	2	0	0	2	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0037	2531	2	0	0	2	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0038	2531	2	1	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0039	2531	2	2	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0040	2531	2	0	0	2	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0041	2531	1	0	1	0	0	0	copy fasta	TDRP	chr8	484946	549834