JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TDRP_chr8_484946_549834	0/0	t0042	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0043	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0044	2531	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0045	2532	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0046	2531	1	0	0	0	0	1	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0047	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0048	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0049	2531	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0050	2531	1	0	0	0	0	1	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0051	2531	1	0	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0052	2532	1	0	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0053	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0054	2531	1	0	0	0	0	1	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0055	2532	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0056	2531	1	0	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0057	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0058	2531	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0059	2531	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0060	2531	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0061	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0062	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0063	2531	1	0	0	0	0	1	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0064	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0065	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0066	2532	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0067	2531	1	0	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0068	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0069	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0070	2531	1	0	0	0	1	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0071	2531	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0072	2531	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0073	2532	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0074	2531	1	0	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0075	2532	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0076	2531	1	0	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0077	2531	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0078	2531	1	0	1	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0079	2531	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0080	2531	1	1	0	0	0	0	copy fasta	TDRP	chr8	484946	549834
TDRP_chr8_484946_549834	0/0	t0081	2531	1	0	0	1	0	0	copy fasta	TDRP	chr8	484946	549834
TEAD1_chr11_12669421_12949737	1/1	t0001	8137	59	8	19	20	3	7	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0002	8139	24	7	2	11	2	2	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0003	8139	14	5	7	0	1	1	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0004	8137	10	1	7	0	0	2	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0005	8137	10	0	0	7	0	3	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0006	8139	10	9	1	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0007	8138	6	6	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0008	8137	5	4	1	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0009	8137	5	4	1	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0010	8138	4	0	2	0	0	2	copy fasta	TEAD1	chr11	12669421	12949737