JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEAD1_chr11_12669421_12949737	0/0	t0011	8137	4	4	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0012	8139	4	4	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0013	8139	3	3	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0014	8137	3	0	0	3	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0015	8139	3	2	0	1	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0016	8118	3	3	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0017	8138	2	0	2	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0018	8139	2	0	0	2	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0019	8137	2	2	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0020	8137	2	0	0	1	0	1	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0021	8137	2	0	0	2	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0022	8139	2	2	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0023	8119	2	2	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0024	8137	1	0	0	0	0	1	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0025	8137	1	0	0	1	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0026	8137	1	0	0	1	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0027	8139	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0028	8139	1	0	0	1	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0029	8137	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0030	8138	1	0	0	0	0	1	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0031	8137	1	0	1	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0032	8137	1	0	1	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0033	8138	1	0	0	1	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0034	8139	1	0	0	1	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0035	8139	1	0	0	0	0	1	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0036	8139	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0037	8139	1	0	0	1	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0038	8139	1	0	0	1	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0039	8139	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0040	8138	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0041	8137	1	0	0	0	0	1	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0042	8118	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0043	8138	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0044	8143	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0045	8145	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0046	8145	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0047	8137	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD1_chr11_12669421_12949737	0/0	t0048	8118	1	1	0	0	0	0	copy fasta	TEAD1	chr11	12669421	12949737
TEAD2_chr19_49335595_49367416	1/0	t0001	820	230	66	49	93	7	14	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/1	t0002	821	114	24	15	51	5	18	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	t0003	821	7	0	0	7	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	t0004	820	2	2	0	0	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	t0005	820	1	0	0	1	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	t0006	807	1	0	0	1	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD2_chr19_49335595_49367416	0/0	t0007	820	1	0	0	1	0	0	copy fasta	TEAD2	chr19	49335595	49367416
TEAD3_chr6_35468597_35502079	1/1	t0001	1679	183	8	43	94	10	26	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0002	1681	52	17	1	25	0	9	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0003	1682	31	2	2	20	1	6	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0004	1676	27	19	4	3	0	1	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0005	1681	22	4	2	16	0	0	copy fasta	TEAD3	chr6	35468597	35502079