JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEAD3_chr6_35468597_35502079	0/0	t0006	1680	19	10	0	7	2	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0007	1677	11	10	1	0	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0008	1680	8	0	2	4	0	2	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0009	1678	7	1	3	3	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0010	1675	6	5	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0011	1680	5	3	2	0	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0012	1680	5	0	2	3	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0013	1679	3	1	1	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0014	1679	3	0	2	0	0	1	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0015	1676	3	0	0	0	1	2	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0016	1677	2	2	0	0	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0017	1677	2	0	0	2	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0018	1679	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0019	1675	1	1	0	0	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0020	1678	1	1	0	0	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0021	1681	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0022	1679	1	0	0	1	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0023	1682	1	0	1	0	0	0	copy fasta	TEAD3	chr6	35468597	35502079
TEAD3_chr6_35468597_35502079	0/0	t0024	1682	1	0	0	0	0	1	copy fasta	TEAD3	chr6	35468597	35502079
TEAD4_chr12_2954397_3045676	1/1	t0001	406	268	88	65	70	12	31	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	t0002	406	4	0	3	1	0	0	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	t0003	406	1	1	0	0	0	0	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	t0004	406	1	1	0	0	0	0	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	t0005	406	1	0	0	0	0	1	copy fasta	TEAD4	chr12	2954397	3045676
TEAD4_chr12_2954397_3045676	0/0	t0006	406	1	0	0	1	0	0	copy fasta	TEAD4	chr12	2954397	3045676
TECPR1_chr7_98209624_98257232	0/0	t0001	3048	27	0	4	21	1	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0002	3048	24	3	1	14	0	6	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0003	3044	22	1	5	11	3	2	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0004	3049	16	0	2	14	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0005	3049	14	7	2	3	0	2	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0006	3049	14	2	3	6	0	3	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0007	3049	12	0	1	11	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0008	3044	12	0	3	6	3	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0009	3044	10	3	2	4	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0010	3044	9	5	0	3	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0011	3049	8	3	2	2	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0012	3044	8	3	3	0	1	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0013	3049	7	0	3	3	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0014	3044	6	3	0	3	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0015	3047	5	5	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0016	3048	5	2	0	3	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0017	3048	5	3	0	2	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0018	3044	5	0	1	0	0	4	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0019	3044	5	5	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0020	3048	4	0	1	3	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0021	3047	4	4	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0022	3049	4	0	2	1	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0023	3044	3	0	0	0	0	3	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0024	3042	3	1	2	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0025	3047	3	0	0	2	0	1	copy fasta	TECPR1	chr7	98209624	98257232