JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TECPR1_chr7_98209624_98257232	0/0	t0076	3044	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0077	3044	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0078	3044	1	0	0	0	1	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0079	3044	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0080	3042	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0081	3042	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0082	3042	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0083	3048	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0084	3048	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	1/0	t0085	3048	1	0	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0086	3047	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0087	3044	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0088	3044	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0089	3049	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0090	3047	1	0	1	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0091	3049	1	0	1	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0092	3049	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0093	3049	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0094	3048	1	0	1	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0095	3048	1	0	0	0	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0096	3049	1	0	0	0	1	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0097	3049	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0098	3049	1	0	1	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0099	3049	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0100	3048	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0101	3048	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0102	3048	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0103	3048	1	0	1	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0104	3047	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0105	3047	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0106	3044	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0107	3046	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0108	3044	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0109	3048	1	0	0	0	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0110	3047	1	0	0	0	0	1	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0111	3048	1	0	1	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0112	3048	1	0	1	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0113	3050	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0114	3049	1	0	0	1	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0115	3046	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0116	3050	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0117	3049	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0118	3048	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0119	3044	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR1_chr7_98209624_98257232	0/0	t0120	3044	1	1	0	0	0	0	copy fasta	TECPR1	chr7	98209624	98257232
TECPR2_chr14_102357941_102507477	0/0	t0001	4469	75	8	17	38	5	7	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0002	4464	61	0	13	45	0	3	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	1/0	t0003	4469	54	12	11	19	3	8	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0004	4469	49	27	7	1	5	9	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0005	4469	12	10	0	0	2	0	copy fasta	TECPR2	chr14	102357941	102507477