JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TECPR2_chr14_102357941_102507477	0/0	t0006	4469	8	1	1	3	0	3	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0007	4466	6	0	0	6	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/1	t0008	4469	4	0	1	0	2	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0009	4444	4	0	0	4	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0010	4469	4	0	0	3	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0011	4469	4	1	2	0	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0012	4469	4	0	0	0	1	3	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0013	4469	3	0	3	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0014	4439	3	0	0	3	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0015	4469	3	3	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0016	4469	3	1	1	0	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0017	4469	3	3	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0018	4469	3	0	0	2	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0019	4474	2	0	0	2	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0020	4469	2	0	0	0	0	2	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0021	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0022	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0023	4469	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0024	4469	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0025	4469	1	0	1	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0026	4469	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0027	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0028	4469	1	0	1	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0029	4469	1	0	0	0	0	1	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0030	4469	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0031	4469	1	0	1	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0032	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0033	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0034	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0035	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0036	4464	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0037	4474	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0038	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0039	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0040	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0041	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0042	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0043	4469	1	0	1	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0044	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0045	4466	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0046	4469	1	1	0	0	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECPR2_chr14_102357941_102507477	0/0	t0047	4466	1	0	0	1	0	0	copy fasta	TECPR2	chr14	102357941	102507477
TECRL_chr4_64272702_64414450	0/1	t0001	2470	71	18	21	21	2	8	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0002	2467	67	2	13	41	4	7	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0003	2470	48	14	11	16	2	5	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0004	2470	26	22	3	0	0	1	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0005	2470	12	0	12	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0006	2470	6	6	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0007	2470	5	5	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0008	2471	4	1	2	0	0	1	copy fasta	TECRL	chr4	64272702	64414450