JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TECRL_chr4_64272702_64414450	0/0	t0009	2467	3	0	0	3	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0010	2470	3	3	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0011	2467	2	0	0	0	0	2	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0012	2470	2	0	0	2	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0013	2470	2	0	0	2	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0014	2470	2	2	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0015	2470	1	1	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0016	2468	1	0	0	1	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	1/0	t0017	2470	1	0	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0018	2471	1	1	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0019	2471	1	1	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0020	2471	1	1	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0021	2470	1	1	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0022	2470	1	0	0	1	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0023	2470	1	0	0	0	0	1	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0024	2470	1	0	1	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0025	2470	1	1	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0026	2470	1	0	1	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0027	2470	1	0	1	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0028	2470	1	1	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0029	2470	1	1	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0030	2467	1	0	0	1	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0031	2469	1	1	0	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0032	2471	1	0	1	0	0	0	copy fasta	TECRL	chr4	64272702	64414450
TECRL_chr4_64272702_64414450	0/0	t0033	2470	1	0	0	0	0	1	copy fasta	TECRL	chr4	64272702	64414450
TECR_chr19_14524594_14570980	1/1	t0001	213	325	92	82	98	16	35	copy fasta	TECR	chr19	14524594	14570980
TECR_chr19_14524594_14570980	0/0	t0002	213	5	0	0	0	0	5	copy fasta	TECR	chr19	14524594	14570980
TECR_chr19_14524594_14570980	0/0	t0003	213	1	0	0	1	0	0	copy fasta	TECR	chr19	14524594	14570980
TECR_chr19_14524594_14570980	0/0	t0004	213	1	0	0	1	0	0	copy fasta	TECR	chr19	14524594	14570980
TECTA_chr11_121096243_121196490	1/1	t0001	885	180	10	39	100	6	23	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	t0002	885	154	62	25	47	5	15	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	t0003	885	6	6	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	t0004	885	3	3	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	t0005	885	1	0	0	0	1	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	t0006	885	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	t0007	885	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	t0008	885	1	0	0	1	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTA_chr11_121096243_121196490	0/0	t0009	885	1	1	0	0	0	0	copy fasta	TECTA	chr11	121096243	121196490
TECTB_chr10_112278400_112310038	1/1	t0001	1911	343	49	74	156	14	48	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0002	1911	16	1	2	13	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0003	1911	13	0	0	13	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0004	1911	12	12	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0005	1964	10	9	1	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0006	1910	9	0	0	9	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0007	1911	5	5	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0008	1911	4	4	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0009	1911	3	0	0	3	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0010	1911	3	3	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0011	1964	2	2	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0012	1911	2	2	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038