JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TECTB_chr10_112278400_112310038	0/0	t0013	1911	2	2	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0014	1911	1	0	0	1	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0015	1964	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0016	1911	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0017	1964	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0018	1911	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0019	1911	1	0	1	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0020	1911	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0021	1911	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0022	1964	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0023	1964	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0024	1911	1	0	0	1	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0025	1911	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0026	1911	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TECTB_chr10_112278400_112310038	0/0	t0027	1911	1	1	0	0	0	0	copy fasta	TECTB	chr10	112278400	112310038
TEC_chr4_48130783_48274838	0/1	t0001	1762	142	8	21	82	10	20	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0002	1767	58	11	6	41	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0003	1766	46	17	18	1	3	7	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	1/0	t0004	1766	41	7	13	11	2	7	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0005	1766	12	12	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0006	1766	12	12	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0007	1762	6	0	0	6	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0008	1766	5	5	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0009	1762	4	3	1	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0010	1762	3	0	0	3	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0011	1762	3	0	2	0	1	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0012	1766	2	2	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0013	1766	2	2	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0014	1762	1	1	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0015	1766	1	1	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0016	1766	1	0	0	1	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0017	1766	1	0	1	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0018	1766	1	1	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0019	1762	1	1	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0020	1762	1	0	0	1	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0021	1763	1	0	0	1	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0022	1762	1	0	0	1	0	0	copy fasta	TEC	chr4	48130783	48274838
TEC_chr4_48130783_48274838	0/0	t0023	1766	1	1	0	0	0	0	copy fasta	TEC	chr4	48130783	48274838
TEDC1_chr14_105486246_105504248	1/1	t0001	433	337	46	69	166	14	40	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0002	433	33	30	3	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0003	433	19	0	0	19	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0004	433	18	15	3	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0005	433	10	1	5	0	2	2	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0006	433	4	0	0	4	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0007	433	2	0	0	1	0	1	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0008	433	2	0	0	0	0	2	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0009	433	2	0	0	2	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0010	433	1	0	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0011	433	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0012	433	1	0	0	0	0	1	copy fasta	TEDC1	chr14	105486246	105504248