JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEDC1_chr14_105486246_105504248	0/0	t0013	433	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0014	433	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0015	433	1	1	0	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0016	433	1	0	1	0	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0017	433	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC1_chr14_105486246_105504248	0/0	t0018	433	1	0	0	1	0	0	copy fasta	TEDC1	chr14	105486246	105504248
TEDC2_chr16_2455109_2469963	1/1	t0001	332	374	91	67	154	14	46	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	t0002	332	2	2	0	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	t0003	332	1	0	1	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDC2_chr16_2455109_2469963	0/0	t0004	332	1	1	0	0	0	0	copy fasta	TEDC2	chr16	2455109	2469963
TEDDM1_chr1_182393117_182405667	0/0	t0001	1730	270	66	37	131	8	28	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	1/1	t0002	1730	58	3	10	36	1	6	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0003	1730	30	1	16	7	3	3	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0004	1729	15	7	4	0	2	2	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0005	1730	12	0	0	11	0	1	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0006	1730	5	5	0	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0007	1730	5	5	0	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0008	1730	3	0	1	0	0	2	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0009	1730	3	3	0	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0010	1729	2	0	1	1	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0011	1730	2	0	0	0	0	2	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0012	1730	2	1	1	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0013	1729	1	0	0	1	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0014	1730	1	1	0	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0015	1729	1	0	0	1	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0016	1730	1	0	0	1	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0017	1743	1	1	0	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0018	1743	1	1	0	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0019	1730	1	0	0	1	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0020	1730	1	0	0	1	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0021	1730	1	0	0	1	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0022	1730	1	0	1	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEDDM1_chr1_182393117_182405667	0/0	t0023	1730	1	0	1	0	0	0	copy fasta	TEDDM1	chr1	182393117	182405667
TEFM_chr17_30893986_30911238	1/1	t0001	224	364	88	74	146	14	40	copy fasta	TEFM	chr17	30893986	30911238
TEF_chr22_41376942_41404326	0/0	t0001	3470	95	10	10	54	8	13	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0002	3470	88	26	4	56	0	2	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0003	3470	72	8	10	34	5	15	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/1	t0004	3470	51	3	19	14	4	10	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0005	3470	16	13	3	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0006	3470	11	10	1	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0007	3470	5	0	1	0	0	4	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0008	3470	4	4	0	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0009	3477	4	4	0	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0010	3470	3	2	1	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0011	3470	3	0	0	3	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0012	3470	3	0	0	0	0	3	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0013	3470	3	0	0	3	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	1/0	t0014	3470	3	0	1	0	1	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0015	3470	3	3	0	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0016	3470	1	1	0	0	0	0	copy fasta	TEF	chr22	41376942	41404326