Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRAT1_chr7_2532810_2560524	0/0	t0006	314	1	0	0	0	0	1	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	t0007	314	1	0	1	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRCA1_chr17_43039295_43130364	0/1	t0001	1495	106	20	16	49	5	15	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	1/0	t0002	1497	99	27	16	40	5	10	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0003	1496	37	17	10	6	0	4	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0004	1498	21	18	3	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0005	1495	3	3	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0006	1498	2	2	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0007	1497	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0008	1496	1	0	1	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0009	1495	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0010	1497	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0011	1496	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0012	1496	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0013	1495	1	0	0	0	0	1	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	t0014	1496	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA2_chr13_32310508_32405268	0/0	t0001	1697	79	5	7	58	1	8	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/1	t0002	1698	59	3	12	35	2	6	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0003	1698	56	13	15	20	1	7	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0004	1699	52	11	20	9	4	8	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0005	1698	35	0	5	23	2	5	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0006	1698	20	0	2	14	0	4	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0007	1698	15	7	5	3	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0008	1697	10	9	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0009	1697	8	1	3	3	1	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0010	1698	8	4	0	2	0	2	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0011	1698	6	1	2	1	0	2	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0012	1698	6	6	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0013	1697	6	1	0	5	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0014	1698	3	3	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0015	1699	3	3	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0016	1698	2	2	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0017	1698	2	0	1	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0018	1698	2	2	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0019	1699	2	2	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0020	1698	2	2	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0021	1699	2	0	2	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0022	1698	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0023	1698	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0024	1698	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0025	1698	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	1/0	t0026	1698	1	0	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0027	1699	1	0	0	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0028	1699	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0029	1698	1	0	0	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0030	1698	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0031	1698	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0032	1698	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0033	1698	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0034	1699	1	0	0	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268