JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEF_chr22_41376942_41404326	0/0	t0017	3470	1	0	0	1	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0018	3470	1	0	0	1	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0019	3470	1	0	1	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0020	3470	1	0	0	1	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0021	3470	1	0	1	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0022	3470	1	1	0	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0023	3470	1	0	0	0	0	1	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0024	3470	1	0	0	1	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0025	3470	1	0	1	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0026	3470	1	0	1	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0027	3470	1	0	0	1	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0028	3470	1	0	1	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0029	3482	1	0	0	1	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0030	3477	1	1	0	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0031	3477	1	1	0	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0032	3470	1	0	0	1	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0033	3470	1	1	0	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0034	3470	1	0	0	1	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0035	3470	1	1	0	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0036	3470	1	0	1	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEF_chr22_41376942_41404326	0/0	t0037	3470	1	1	0	0	0	0	copy fasta	TEF	chr22	41376942	41404326
TEKT1_chr17_6792993_6836729	1/0	t0001	2133	148	31	29	62	6	19	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0002	2133	110	13	21	66	3	7	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0003	2133	33	7	15	0	7	4	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0004	2133	29	13	0	15	0	1	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0005	2133	19	1	1	16	0	1	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/1	t0006	2133	16	0	2	8	0	5	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0007	2134	9	3	4	0	0	2	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0008	2134	8	1	3	0	0	4	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0009	2133	6	6	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0010	2133	6	6	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0011	2133	4	2	0	0	2	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0012	2133	3	1	2	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0013	2133	2	2	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0014	2133	2	2	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0015	2133	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0016	2133	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0017	2133	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0018	2133	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0019	2133	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0020	2133	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0021	2133	1	0	0	1	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0022	2133	1	0	0	0	0	1	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0023	2133	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0024	2133	1	0	1	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT1_chr17_6792993_6836729	0/0	t0025	2133	1	1	0	0	0	0	copy fasta	TEKT1	chr17	6792993	6836729
TEKT2_chr1_36079094_36093275	1/1	t0001	198	362	89	68	163	9	31	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	t0002	198	48	0	3	44	0	1	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	t0003	198	10	3	5	0	2	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT2_chr1_36079094_36093275	0/0	t0004	198	1	0	0	0	1	0	copy fasta	TEKT2	chr1	36079094	36093275