JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEKT2_chr1_36079094_36093275	0/0	t0005	90	1	0	0	1	0	0	copy fasta	TEKT2	chr1	36079094	36093275
TEKT3_chr17_15298812_15346597	1/1	t0001	268	344	82	65	147	13	35	copy fasta	TEKT3	chr17	15298812	15346597
TEKT3_chr17_15298812_15346597	0/0	t0002	268	54	4	9	37	1	3	copy fasta	TEKT3	chr17	15298812	15346597
TEKT4_chr2_94866430_94881823	1/0	t0001	205	245	48	41	116	8	31	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/1	t0002	205	137	17	33	74	3	9	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	t0003	203	43	30	6	4	1	2	copy fasta	TEKT4	chr2	94866430	94881823
TEKT4_chr2_94866430_94881823	0/0	t0004	203	1	1	0	0	0	0	copy fasta	TEKT4	chr2	94866430	94881823
TEKT5_chr16_10622501_10699930	1/1	t0001	140	382	87	67	164	14	48	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	t0002	140	3	3	0	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	t0003	140	2	0	0	0	2	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKT5_chr16_10622501_10699930	0/0	t0004	140	1	0	1	0	0	0	copy fasta	TEKT5	chr16	10622501	10699930
TEKTIP1_chr19_3534174_3549030	1/1	t0001	25	439	97	88	190	12	50	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	t0002	25	2	2	0	0	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEKTIP1_chr19_3534174_3549030	0/0	t0003	25	1	1	0	0	0	0	copy fasta	TEKTIP1	chr19	3534174	3549030
TEK_chr9_27104225_27235174	1/0	t0001	1309	133	39	34	33	9	17	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0002	1310	63	3	4	50	0	6	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0003	1309	49	23	13	5	3	5	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0004	1310	23	4	4	15	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0005	1309	16	8	5	0	2	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0006	1309	15	0	3	9	1	2	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0007	1309	9	4	4	0	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0008	1310	7	0	6	0	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0009	1310	5	1	0	4	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0010	1310	4	1	1	0	0	2	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/1	t0011	1307	3	0	1	0	1	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0012	1309	2	2	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0013	1309	2	1	1	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0014	1309	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0015	1309	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0016	1309	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0017	1309	1	0	0	0	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0018	1309	1	1	0	0	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0019	1310	1	0	0	0	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0020	1310	1	0	0	0	0	1	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0021	1328	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TEK_chr9_27104225_27235174	0/0	t0022	1310	1	0	0	1	0	0	copy fasta	TEK	chr9	27104225	27235174
TELO2_chr16_1488360_1515454	0/1	t0001	801	90	22	15	43	2	7	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	1/0	t0002	801	80	2	32	19	11	15	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0003	801	75	30	4	37	0	4	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0004	801	54	2	10	32	1	9	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0005	801	23	13	2	7	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0006	801	21	0	8	12	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0007	801	20	0	0	20	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0008	801	16	1	7	8	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0009	801	11	1	1	4	0	5	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0010	801	11	6	0	5	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0011	801	10	0	0	9	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0012	801	5	0	1	0	4	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0013	801	5	0	0	5	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0014	801	5	5	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454