JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TELO2_chr16_1488360_1515454	0/0	t0015	801	4	4	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0016	801	3	3	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0017	801	2	0	2	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0018	801	2	1	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0019	801	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0020	801	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0021	801	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0022	801	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0023	801	1	0	0	0	0	1	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0024	801	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0025	801	1	0	0	1	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0026	801	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TELO2_chr16_1488360_1515454	0/0	t0027	801	1	1	0	0	0	0	copy fasta	TELO2	chr16	1488360	1515454
TEN1_chr17_75974240_76005586	1/1	t0001	603	325	75	68	127	13	40	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	t0002	603	31	5	3	21	0	2	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	t0003	603	6	6	0	0	0	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	t0004	603	6	5	1	0	0	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	t0005	622	5	1	1	2	1	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	t0006	603	3	3	0	0	0	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	t0007	603	2	0	2	0	0	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	t0008	603	1	0	1	0	0	0	copy fasta	TEN1	chr17	75974240	76005586
TEN1_chr17_75974240_76005586	0/0	t0009	603	1	1	0	0	0	0	copy fasta	TEN1	chr17	75974240	76005586
TENM1_chrX_124370903_125209312	0/1	t0001	5349	52	5	10	28	1	7	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0002	5349	24	1	3	18	1	1	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0003	5350	16	0	3	9	2	2	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0004	5349	7	4	1	0	1	1	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0005	5349	6	6	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0006	5349	5	4	1	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0007	5349	3	1	0	0	0	2	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0008	5349	2	1	1	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0009	5345	2	2	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	1/0	t0010	5349	2	0	0	0	0	1	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0011	5351	2	0	0	1	0	1	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0012	5349	2	2	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0013	5349	2	0	0	2	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0014	5349	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0015	5349	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0016	5349	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0017	5349	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0018	5349	1	0	0	0	0	1	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0019	5349	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0020	5349	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0021	5349	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0022	5350	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0023	5350	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0024	5349	1	0	0	1	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0025	5347	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0026	5347	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0027	5348	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312
TENM1_chrX_124370903_125209312	0/0	t0028	5347	1	1	0	0	0	0	copy fasta	TENM1	chrX	124370903	125209312