JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TENM2_chr5_166974029_168269157	0/0	t0001	2038	7	6	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0002	2032	7	6	0	0	0	1	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0003	2047	5	5	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0004	2053	2	2	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0005	2044	2	2	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0006	2035	2	1	0	0	0	1	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0007	2029	2	0	1	0	0	1	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0008	2026	2	2	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0009	2041	2	2	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0010	2023	2	1	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0011	2047	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0012	2038	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0013	2038	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0014	2029	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0015	2029	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0016	2026	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0017	2062	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0018	2050	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0019	2047	1	0	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0020	2047	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0021	2044	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0022	2041	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0023	2041	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0024	2029	1	0	0	0	0	1	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0025	2026	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0026	2050	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0027	2044	1	0	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0028	2041	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0029	2032	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0030	2044	1	1	0	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM2_chr5_166974029_168269157	0/0	t0031	2023	1	0	1	0	0	0	copy fasta	TENM2	chr5	166974029	168269157
TENM3_chr4_182238402_182808024	0/0	t0001	2824	72	21	21	18	4	8	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0002	2824	30	16	6	5	0	3	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0003	2824	6	6	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0004	2823	6	5	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0005	2824	5	4	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0006	2824	3	3	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0007	2825	2	0	0	1	0	1	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0008	2825	2	0	2	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0009	2824	2	2	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0010	2824	2	2	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0011	2824	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0012	2824	1	0	0	1	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0013	2824	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0014	2824	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0015	2824	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0016	2824	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0017	2824	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0018	2824	1	0	1	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM3_chr4_182238402_182808024	0/0	t0019	2824	1	0	0	1	0	0	copy fasta	TENM3	chr4	182238402	182808024