JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TENM3_chr4_182238402_182808024	0/0	t0020	2824	1	1	0	0	0	0	copy fasta	TENM3	chr4	182238402	182808024
TENM4_chr11_78647829_79446030	0/0	t0001	6074	6	3	1	1	0	1	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0002	6074	4	0	2	0	1	1	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0003	6072	4	0	3	0	1	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0004	6074	3	0	1	1	0	1	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0005	6074	3	3	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0006	6072	3	1	0	0	0	2	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0007	6072	3	2	0	0	1	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0008	6074	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0009	6074	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0010	6074	2	1	0	0	0	1	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0011	6074	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	1/0	t0012	6072	2	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0013	6072	2	1	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0014	6072	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0015	6072	2	1	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0016	6072	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0017	6073	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0018	6070	2	2	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0019	6074	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0020	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0021	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/1	t0022	6074	1	0	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0023	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0024	6074	1	0	0	0	1	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0025	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0026	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0027	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0028	6075	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0029	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0030	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0031	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0032	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0033	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0034	6074	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0035	6074	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0036	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0037	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0038	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0039	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0040	6074	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0041	6072	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0042	6072	1	0	0	1	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0043	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0044	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0045	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0046	6072	1	0	0	0	0	1	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0047	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0048	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0049	6072	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030