JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TENM4_chr11_78647829_79446030	0/0	t0050	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0051	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0052	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0053	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0054	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0055	6073	1	0	1	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0056	6072	1	0	0	1	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0057	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0058	6072	1	0	0	0	0	1	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0059	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0060	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0061	6072	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0062	6070	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0063	6071	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENM4_chr11_78647829_79446030	0/0	t0064	6070	1	1	0	0	0	0	copy fasta	TENM4	chr11	78647829	79446030
TENT2_chr5_79607441_79693246	0/0	t0001	3649	146	21	22	87	4	12	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0002	3647	33	1	10	18	0	4	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0003	3644	24	5	1	11	0	7	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0004	3647	22	22	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0005	3649	17	0	0	13	0	4	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0006	3652	16	3	4	5	2	2	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0007	3649	9	0	1	5	2	1	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/1	t0008	3649	8	0	0	5	0	2	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0009	3647	7	6	0	0	0	1	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0010	3644	6	0	0	4	2	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0011	3644	6	5	1	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0012	3647	3	3	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0013	3649	3	1	1	0	0	1	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0014	3652	3	0	0	1	1	1	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0015	3652	3	0	3	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0016	3647	2	1	0	0	0	1	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0017	3652	2	2	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0018	3652	2	2	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0019	3649	2	2	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0020	3649	2	2	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0021	3652	2	2	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0022	3644	1	0	1	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0023	3644	1	0	0	0	0	1	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0024	3644	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0025	3647	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0026	3647	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0027	3644	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0028	3649	1	0	1	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0029	3649	1	0	0	0	0	1	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0030	3649	1	0	1	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0031	3652	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0032	3649	1	0	0	1	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0033	3649	1	0	0	0	1	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	1/0	t0034	3646	1	0	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0035	3652	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246