JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TENT2_chr5_79607441_79693246	0/0	t0036	3652	1	0	0	0	0	1	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0037	3652	1	0	0	0	0	1	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0038	3649	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0039	3652	1	0	1	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0040	3652	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0041	3649	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0042	3649	1	1	0	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0043	3646	1	0	1	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0044	3652	1	0	1	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0045	3649	1	0	1	0	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0046	3649	1	0	0	1	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT2_chr5_79607441_79693246	0/0	t0047	3649	1	0	0	1	0	0	copy fasta	TENT2	chr5	79607441	79693246
TENT4A_chr5_6708432_6762044	0/0	t0001	2652	138	33	29	59	6	11	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0002	2646	69	7	14	35	2	11	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/1	t0003	2646	49	4	11	27	3	3	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0004	2652	30	0	10	15	1	4	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0005	2646	20	6	4	5	0	5	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	1/0	t0006	2652	9	7	1	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0007	2649	8	8	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0008	2643	8	8	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0009	2648	5	0	0	4	0	1	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0010	2640	5	5	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0011	2661	4	3	1	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0012	2647	3	0	0	2	0	1	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0013	2652	3	3	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0014	2646	3	0	1	0	1	1	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0015	2646	3	0	0	3	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0016	2655	3	3	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0017	2646	2	1	1	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0018	2652	2	1	1	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0019	2646	2	0	1	0	1	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0020	2653	2	0	0	2	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0021	2655	2	0	1	0	0	1	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0022	2646	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0023	2649	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0024	2664	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0025	2649	1	0	1	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0026	2649	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0027	2646	1	0	0	0	0	1	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0028	2646	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0029	2646	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0030	2646	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0031	2646	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0032	2647	1	0	0	0	0	1	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0033	2652	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0034	2652	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0035	2652	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0036	2652	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0037	2664	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4A_chr5_6708432_6762044	0/0	t0038	2646	1	0	0	1	0	0	copy fasta	TENT4A	chr5	6708432	6762044