JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TENT4A_chr5_6708432_6762044	0/0	t0039	2652	1	1	0	0	0	0	copy fasta	TENT4A	chr5	6708432	6762044
TENT4B_chr16_50148306_50240310	0/0	t0001	6299	89	19	13	46	3	8	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/1	t0002	6298	87	9	20	46	4	7	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0003	6299	18	1	1	13	0	3	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0004	6302	11	2	5	1	0	3	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0005	6301	10	0	7	0	2	1	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0006	6300	6	6	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0007	6301	5	5	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0008	6298	4	4	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0009	6299	4	4	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0010	6298	4	4	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0011	6306	3	3	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0012	6300	3	0	0	3	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0013	6298	3	0	0	3	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0014	6298	3	0	2	0	0	1	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0015	6303	3	0	2	0	1	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0016	6301	3	0	2	0	0	1	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0017	6301	3	2	1	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0018	6301	3	2	1	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0019	6295	3	3	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0020	6298	2	2	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0021	6297	2	1	1	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0022	6300	2	2	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0023	6299	2	1	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0024	6298	1	0	0	0	1	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0025	6314	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0026	6305	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0027	6303	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0028	6299	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0029	6298	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0030	6299	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0031	6298	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0032	6300	1	0	1	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0033	6300	1	0	0	0	0	1	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0034	6298	1	0	0	0	0	1	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0035	6298	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0036	6299	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0037	6298	1	0	1	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0038	6298	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0039	6298	1	0	1	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0040	6298	1	0	0	0	0	1	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0041	6298	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0042	6299	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0043	6298	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0044	6299	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0045	6299	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0046	6299	1	0	1	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0047	6299	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0048	6297	1	0	0	0	0	1	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0049	6299	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310