JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TENT4B_chr16_50148306_50240310	0/0	t0050	6301	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0051	6300	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0052	6300	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0053	6299	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0054	6301	1	0	0	0	1	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0055	6298	1	0	1	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0056	6298	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	1/0	t0057	6299	1	0	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0058	6299	1	0	0	1	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0059	6299	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0060	6298	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0061	6299	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT4B_chr16_50148306_50240310	0/0	t0062	6300	1	1	0	0	0	0	copy fasta	TENT4B	chr16	50148306	50240310
TENT5A_chr6_81740730_81757681	1/0	t0001	4254	230	20	49	128	9	23	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0002	4253	39	19	2	12	2	4	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0003	4254	20	0	11	5	1	3	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/1	t0004	4253	20	9	1	2	0	7	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0005	4254	17	10	1	6	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0006	4254	15	0	0	15	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0007	4254	15	1	2	10	1	1	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0008	4254	14	6	7	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0009	4254	11	11	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0010	4254	9	1	5	0	0	3	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0011	4254	5	5	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0012	4254	5	0	0	5	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0013	4254	4	2	0	2	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0014	4254	4	4	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0015	4254	4	0	0	3	0	1	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0016	4254	3	0	0	0	0	3	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0017	4254	2	0	0	2	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0018	4286	2	0	0	2	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0019	4254	2	2	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0020	4254	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0021	4254	1	0	0	0	1	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0022	4254	1	1	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0023	4253	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0024	4253	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0025	4254	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0026	4254	1	0	1	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0027	4254	1	0	1	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0028	4254	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0029	4254	1	1	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0030	4254	1	0	1	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0031	4254	1	1	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0032	4254	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0033	4254	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0034	4254	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0035	4254	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0036	4254	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0037	4254	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681