JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TENT5A_chr6_81740730_81757681	0/0	t0038	4286	1	0	0	0	0	1	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0039	4253	1	0	0	0	1	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0040	4254	1	0	1	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0041	4254	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0042	4254	1	1	0	0	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0043	4253	1	0	0	0	1	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5A_chr6_81740730_81757681	0/0	t0044	4253	1	0	0	1	0	0	copy fasta	TENT5A	chr6	81740730	81757681
TENT5B_chr1_27000020_27017850	1/1	t0001	1105	272	74	58	98	11	29	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	t0002	1105	9	3	3	1	2	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	t0003	1105	2	2	0	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	t0004	1105	1	0	0	0	1	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	t0005	1105	1	0	0	0	0	1	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	t0006	1105	1	1	0	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	t0007	1105	1	0	1	0	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5B_chr1_27000020_27017850	0/0	t0008	1105	1	0	0	1	0	0	copy fasta	TENT5B	chr1	27000020	27017850
TENT5C_chr1_117601048_117633389	1/0	t0001	4479	119	20	20	61	3	14	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/1	t0002	4475	66	18	21	15	1	10	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0003	4482	45	12	1	28	2	2	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0004	4479	42	0	12	21	2	7	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0005	4481	17	1	4	11	0	1	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0006	4474	12	0	0	12	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0007	4476	9	9	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0008	4484	8	8	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0009	4482	6	6	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0010	4479	5	0	0	5	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0011	4481	5	0	0	5	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0012	4479	4	4	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0013	4480	3	0	0	3	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0014	4475	3	0	3	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0015	4475	3	0	0	3	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0016	4478	3	0	0	2	0	1	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0017	4479	2	1	1	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0018	4479	2	2	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0019	4481	2	2	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0020	4480	2	0	0	2	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0021	4481	2	0	0	2	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0022	4481	2	0	0	2	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0023	4479	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0024	4479	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0025	4474	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0026	4479	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0027	4480	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0028	4481	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0029	4479	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0030	4479	1	0	0	0	0	1	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0031	4479	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0032	4479	1	0	0	0	0	1	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0033	4479	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0034	4479	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0035	4481	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389