Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRCA2_chr13_32310508_32405268	0/0	t0035	1699	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0036	1698	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0037	1699	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0038	1698	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0039	1698	1	0	0	0	1	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0040	1698	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	t0041	1699	1	0	0	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCC3_chrX_155066508_155128077	0/1	t0001	1894	121	5	23	79	5	8	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0002	1894	100	40	19	23	4	14	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0003	1894	10	10	0	0	0	0	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	1/0	t0004	1894	7	6	0	0	0	0	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0005	1895	5	2	2	0	0	1	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0006	1894	3	3	0	0	0	0	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0007	1894	1	1	0	0	0	0	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0008	1895	1	1	0	0	0	0	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0009	1894	1	0	0	0	0	1	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0010	1894	1	0	0	0	0	1	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0011	1893	1	1	0	0	0	0	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0012	1894	1	1	0	0	0	0	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0013	1894	1	0	0	0	0	1	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	0/0	t0014	1893	1	0	0	1	0	0	copy fasta	BRCC3	chrX	155066508	155128077
BRD1_chr22_49768283_49832873	0/0	t0001	1342	119	50	11	39	1	18	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	1/1	t0002	1342	98	18	20	43	7	8	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	t0003	1342	22	10	3	0	4	5	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	t0004	1348	4	0	0	4	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	t0005	1342	4	0	0	4	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	t0006	1330	3	3	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	t0007	1342	3	3	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	t0008	1342	1	0	0	1	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	t0009	1342	1	0	0	1	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	t0010	1342	1	0	1	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	t0011	1342	1	0	1	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	t0012	1342	1	0	0	0	0	1	copy fasta	BRD1	chr22	49768283	49832873
BRD2_chr6_32963594_32986501	0/0	t0001	2551	112	17	18	62	3	12	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0002	2551	42	0	9	25	1	7	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0003	2550	33	11	1	17	1	3	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0004	2551	32	2	2	24	2	2	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0005	2551	27	3	3	15	3	3	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0006	2551	19	1	5	13	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0007	2552	16	15	1	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0008	2550	13	0	0	13	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0009	2551	12	3	3	2	2	2	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0010	2550	12	0	10	0	2	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/1	t0011	2552	12	0	5	4	0	2	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0012	2551	9	5	1	2	0	1	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0013	2551	8	0	2	1	0	5	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0014	2552	7	5	2	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0015	2550	7	0	0	7	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0016	2550	7	7	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0017	2548	6	0	0	6	0	0	copy fasta	BRD2	chr6	32963594	32986501