JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TENT5C_chr1_117601048_117633389	0/0	t0036	4479	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0037	4478	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0038	4475	1	0	0	0	0	1	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0039	4479	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0040	4479	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0041	4476	1	0	1	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0042	4482	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0043	4483	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0044	4446	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0045	4476	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0046	4481	1	0	1	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0047	4480	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0048	4478	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0049	4483	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0050	4481	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0051	4481	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0052	4481	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0053	4482	1	0	0	1	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5C_chr1_117601048_117633389	0/0	t0054	4479	1	1	0	0	0	0	copy fasta	TENT5C	chr1	117601048	117633389
TENT5D_chrX_80415447_80450309	1/1	t0001	1859	168	39	34	63	7	23	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	t0002	1859	80	7	14	50	0	9	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	t0003	1859	28	13	4	7	3	1	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	t0004	1860	8	4	2	2	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	t0005	1859	4	4	0	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	t0006	1859	4	0	0	4	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	t0007	1859	2	2	0	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	t0008	1859	1	0	0	0	1	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	t0009	1859	1	0	0	1	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	t0010	1855	1	1	0	0	0	0	copy fasta	TENT5D	chrX	80415447	80450309
TENT5D_chrX_80415447_80450309	0/0	t0011	1859	1	0	0	0	0	1	copy fasta	TENT5D	chrX	80415447	80450309
TEP1_chr14_20360667_20418501	0/0	t0001	2892	157	12	33	81	10	21	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0002	2894	76	21	9	39	1	6	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/1	t0003	2892	63	4	12	34	5	7	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0004	2894	20	1	8	6	0	5	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0005	2892	13	11	2	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0006	2891	7	0	6	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0007	2892	6	6	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0008	2894	5	4	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0009	2892	5	0	0	5	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0010	2894	4	3	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0011	2892	4	4	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0012	2892	3	3	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0013	2892	3	3	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0014	2892	3	3	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0015	2894	3	3	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0016	2878	2	2	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0017	2876	2	1	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0018	2892	2	2	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0019	2894	2	2	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0020	2892	2	2	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501