JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEP1_chr14_20360667_20418501	0/0	t0021	2892	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0022	2892	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0023	2894	1	0	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0024	2892	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0025	2892	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0026	2892	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	1/0	t0027	2892	1	0	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0028	2892	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0029	2892	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0030	2892	1	0	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0031	2894	1	0	0	0	0	1	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0032	2894	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0033	2892	1	0	0	1	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0034	2892	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0035	2894	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0036	2892	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0037	2892	1	1	0	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEP1_chr14_20360667_20418501	0/0	t0038	2892	1	0	1	0	0	0	copy fasta	TEP1	chr14	20360667	20418501
TEPP_chr16_57971544_57993116	0/1	t0001	784	309	90	45	114	17	42	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	1/0	t0002	784	124	3	27	87	1	5	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	t0003	784	6	6	0	0	0	0	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	t0004	784	2	0	0	2	0	0	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	t0005	784	1	0	0	1	0	0	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	t0006	784	1	0	0	0	0	1	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	t0007	784	1	0	0	1	0	0	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	t0008	784	1	0	0	1	0	0	copy fasta	TEPP	chr16	57971544	57993116
TEPP_chr16_57971544_57993116	0/0	t0009	784	1	1	0	0	0	0	copy fasta	TEPP	chr16	57971544	57993116
TEPSIN_chr17_81223277_81244055	0/0	t0001	674	168	51	33	57	9	18	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/1	t0002	674	149	12	33	74	5	24	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	1/0	t0003	674	19	13	3	2	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	t0004	674	9	7	1	1	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	t0005	674	8	8	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	t0006	674	5	0	0	5	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	t0007	674	2	0	0	2	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	t0008	674	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	t0009	674	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	t0010	674	1	0	0	1	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	t0011	674	1	0	0	1	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	t0012	674	1	1	0	0	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TEPSIN_chr17_81223277_81244055	0/0	t0013	652	1	0	0	1	0	0	copy fasta	TEPSIN	chr17	81223277	81244055
TERB1_chr16_66749640_66806584	1/1	t0001	563	338	75	59	144	12	46	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	t0002	563	11	11	0	0	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	t0003	563	1	0	0	1	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	t0004	563	1	0	0	1	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB1_chr16_66749640_66806584	0/0	t0005	563	1	0	1	0	0	0	copy fasta	TERB1	chr16	66749640	66806584
TERB2_chr15_44951687_44984229	1/1	t0001	634	224	69	38	84	12	19	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	t0002	634	116	20	16	69	2	9	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	t0003	634	3	1	0	2	0	0	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	t0004	634	2	2	0	0	0	0	copy fasta	TERB2	chr15	44951687	44984229
TERB2_chr15_44951687_44984229	0/0	t0005	634	1	0	0	1	0	0	copy fasta	TERB2	chr15	44951687	44984229