JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TERF1_chr8_73003864_73053123	1/1	t0001	2010	228	56	47	90	5	28	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0002	2010	56	21	10	9	5	11	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0003	2010	35	0	5	22	3	5	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0004	2010	6	6	0	0	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0005	2010	6	6	0	0	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0006	2010	3	0	3	0	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0007	2008	3	3	0	0	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0008	2010	1	0	0	0	0	1	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0009	2010	1	0	1	0	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0010	2010	1	0	0	0	0	1	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0011	2010	1	0	0	0	1	0	copy fasta	TERF1	chr8	73003864	73053123
TERF1_chr8_73003864_73053123	0/0	t0012	2010	1	0	0	1	0	0	copy fasta	TERF1	chr8	73003864	73053123
TERF2IP_chr16_75642773_75662432	0/0	t0001	932	176	32	29	102	1	12	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	1/1	t0002	932	175	34	44	57	12	26	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	t0003	932	18	11	1	5	0	1	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	t0004	932	11	6	2	2	1	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	t0005	932	2	1	1	0	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	t0006	932	2	0	0	2	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	t0007	932	1	1	0	0	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	t0008	932	1	0	1	0	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	t0009	932	1	0	0	0	0	1	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	t0010	932	1	1	0	0	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	t0011	932	1	1	0	0	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2IP_chr16_75642773_75662432	0/0	t0012	932	1	1	0	0	0	0	copy fasta	TERF2IP	chr16	75642773	75662432
TERF2_chr16_69350567_69391007	1/0	t0001	1368	253	56	53	101	11	31	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/1	t0002	1368	25	4	5	7	3	5	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0003	1368	14	14	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0004	1368	12	0	0	12	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0005	1369	7	1	3	3	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0006	1369	4	4	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0007	1369	4	3	1	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0008	1368	4	0	0	4	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0009	1368	4	0	2	0	0	2	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0010	1369	2	2	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0011	1368	2	0	1	0	0	1	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0012	1368	2	2	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0013	1369	2	0	1	0	0	1	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0014	1369	1	1	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0015	1369	1	1	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0016	1368	1	0	0	1	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0017	1369	1	1	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERF2_chr16_69350567_69391007	0/0	t0018	1369	1	1	0	0	0	0	copy fasta	TERF2	chr16	69350567	69391007
TERT_chr5_1248167_1300068	1/1	t0001	641	340	62	58	156	15	47	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	t0002	641	43	27	12	0	1	3	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	t0003	641	4	4	0	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	t0004	641	3	3	0	0	0	0	copy fasta	TERT	chr5	1248167	1300068
TERT_chr5_1248167_1300068	0/0	t0005	641	2	0	0	2	0	0	copy fasta	TERT	chr5	1248167	1300068
TESC_chr12_117033923_117104416	1/1	t0001	345	236	55	37	106	7	29	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	t0002	345	32	15	9	1	3	4	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	t0003	344	27	22	2	3	0	0	copy fasta	TESC	chr12	117033923	117104416