JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TESC_chr12_117033923_117104416	0/0	t0004	343	6	5	1	0	0	0	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	t0005	344	4	0	1	3	0	0	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	t0006	345	2	0	0	0	2	0	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	t0007	345	2	1	0	1	0	0	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	t0008	345	1	0	0	0	0	1	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	t0009	345	1	0	0	1	0	0	copy fasta	TESC	chr12	117033923	117104416
TESC_chr12_117033923_117104416	0/0	t0010	345	1	0	0	1	0	0	copy fasta	TESC	chr12	117033923	117104416
TESK1_chr9_35600262_35615033	1/1	t0001	650	296	89	59	101	11	34	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	t0002	661	84	2	12	55	2	13	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	t0003	650	2	0	2	0	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	t0004	650	2	0	1	0	1	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	t0005	650	1	0	0	1	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	t0006	650	1	0	0	1	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	t0007	650	1	1	0	0	0	0	copy fasta	TESK1	chr9	35600262	35615033
TESK1_chr9_35600262_35615033	0/0	t0008	650	1	0	0	0	0	1	copy fasta	TESK1	chr9	35600262	35615033
TESK2_chr1_45338883_45496163	0/0	t0001	1356	95	14	11	57	6	7	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0002	1356	85	16	15	43	0	11	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	1/0	t0003	1356	36	7	11	8	3	6	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0004	1356	16	15	1	0	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0005	1357	10	0	0	10	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0006	1356	9	0	5	0	4	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0007	1356	8	6	0	0	1	1	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0008	1356	8	4	3	1	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0009	1356	6	6	0	0	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/1	t0010	1356	4	0	1	0	2	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0011	1356	3	1	1	0	0	1	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0012	1356	3	0	0	3	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0013	1357	2	0	0	2	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESK2_chr1_45338883_45496163	0/0	t0014	1356	1	1	0	0	0	0	copy fasta	TESK2	chr1	45338883	45496163
TESMIN_chr11_68702440_68756520	1/1	t0001	1009	287	75	60	119	6	25	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	t0002	1009	3	0	0	3	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	t0003	1009	3	2	1	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	t0004	1009	2	2	0	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	t0005	1009	1	0	0	0	0	1	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	t0006	1009	1	1	0	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	t0007	1009	1	0	1	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	t0008	1009	1	1	0	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESMIN_chr11_68702440_68756520	0/0	t0009	1009	1	1	0	0	0	0	copy fasta	TESMIN	chr11	68702440	68756520
TESPA1_chr12_54943015_54989762	0/0	t0001	2596	58	1	8	42	1	6	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0002	2595	56	24	17	2	5	8	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0003	2600	32	3	10	14	3	2	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0004	2596	22	1	6	14	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0005	2595	19	1	0	16	0	2	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	1/0	t0006	2600	12	0	2	6	1	2	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0007	2600	9	0	0	9	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0008	2596	7	6	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0009	2595	7	1	1	5	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0010	2600	7	0	0	7	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0011	2595	6	0	3	0	1	2	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0012	2599	6	1	5	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762