JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TESPA1_chr12_54943015_54989762	0/0	t0013	2599	5	4	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0014	2596	5	0	0	5	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0015	2596	4	0	0	4	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0016	2596	4	4	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0017	2596	4	0	0	4	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0018	2595	4	2	1	0	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0019	2596	3	3	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0020	2600	3	3	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0021	2600	3	0	1	0	2	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0022	2595	3	0	0	3	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0023	2595	3	2	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0024	2600	3	3	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/1	t0025	2599	3	1	0	0	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0026	2596	3	1	2	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0027	2600	2	0	0	2	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0028	2595	2	0	0	2	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0029	2599	2	0	0	1	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0030	2595	2	0	0	1	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0031	2595	2	0	0	2	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0032	2596	2	0	0	2	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0033	2596	2	0	0	2	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0034	2595	2	0	0	0	0	2	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0035	2596	2	2	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0036	2600	2	2	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0037	2600	2	0	0	2	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0038	2600	2	0	0	2	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0039	2599	2	2	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0040	2595	1	0	0	0	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0041	2595	1	0	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0042	2595	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0043	2598	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0044	2596	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0045	2596	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0046	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0047	2595	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0048	2599	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0049	2599	1	0	0	0	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0050	2595	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0051	2595	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0052	2595	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0053	2596	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0054	2596	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0055	2596	1	0	0	0	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0056	2596	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0057	2595	1	0	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0058	2600	1	0	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0059	2600	1	0	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0060	2599	1	0	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0061	2595	1	0	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0062	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762