JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TESPA1_chr12_54943015_54989762	0/0	t0063	2600	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0064	2599	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0065	2600	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0066	2600	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0067	2600	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0068	2599	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0069	2600	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0070	2598	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0071	2599	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0072	2599	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0073	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0074	2595	1	0	0	0	1	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0075	2599	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0076	2596	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0077	2600	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0078	2600	1	0	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0079	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0080	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0081	2595	1	0	0	0	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0082	2595	1	0	0	0	0	1	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0083	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0084	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0085	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0086	2595	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0087	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0088	2595	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0089	2596	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0090	2595	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0091	2595	1	0	1	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0092	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0093	2599	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0094	2600	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0095	2599	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0096	2595	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0097	2599	1	1	0	0	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TESPA1_chr12_54943015_54989762	0/0	t0098	2596	1	0	0	1	0	0	copy fasta	TESPA1	chr12	54943015	54989762
TES_chr7_116205539_116263783	0/0	t0001	1466	99	13	10	68	4	4	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	t0002	1471	71	0	16	48	1	6	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	t0003	1470	67	10	14	27	5	11	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	t0004	1468	64	10	11	31	2	10	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	1/1	t0005	1471	58	23	14	8	2	9	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	t0006	1469	15	15	0	0	0	0	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	t0007	1471	4	4	0	0	0	0	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	t0008	1466	4	1	2	1	0	0	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	t0009	1466	2	2	0	0	0	0	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	t0010	1466	1	0	0	1	0	0	copy fasta	TES	chr7	116205539	116263783
TES_chr7_116205539_116263783	0/0	t0011	1466	1	0	1	0	0	0	copy fasta	TES	chr7	116205539	116263783
TET1_chr10_68555337_68699487	0/0	t0001	3202	94	25	16	41	3	9	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/1	t0002	3202	81	15	13	37	4	11	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0003	3202	21	1	4	11	0	5	copy fasta	TET1	chr10	68555337	68699487