JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TET1_chr10_68555337_68699487	0/0	t0004	3202	16	6	5	2	1	2	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0005	3202	16	1	1	8	0	6	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0006	3202	12	0	2	9	1	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0007	3202	9	0	5	3	0	1	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0008	3202	5	4	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0009	3202	4	4	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0010	3202	3	3	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0011	3202	3	3	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0012	3202	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0013	3202	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	1/0	t0014	3202	2	0	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0015	3202	2	2	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0016	3202	1	0	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0017	3202	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0018	3202	1	0	0	0	1	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0019	3202	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0020	3202	1	0	1	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0021	3202	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0022	3202	1	0	0	0	0	1	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0023	3202	1	0	0	0	0	1	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0024	3202	1	1	0	0	0	0	copy fasta	TET1	chr10	68555337	68699487
TET1_chr10_68555337_68699487	0/0	t0025	3202	1	0	0	1	0	0	copy fasta	TET1	chr10	68555337	68699487
TET2_chr4_105141876_105284803	1/0	t0001	3581	45	2	4	27	2	9	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0002	3578	36	0	3	33	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0003	3581	31	2	5	18	2	4	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0004	3583	18	1	4	11	0	2	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/1	t0005	3579	18	2	11	3	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0006	3585	10	0	6	0	3	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0007	3584	9	1	3	4	1	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0008	3585	9	0	2	5	0	2	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0009	3583	8	2	0	4	0	2	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0010	3580	6	0	0	6	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0011	3582	6	5	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0012	3577	5	5	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0013	3580	5	0	0	4	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0014	3587	4	0	3	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0015	3583	4	0	3	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0016	3590	4	1	1	2	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0017	3588	4	0	0	4	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0018	3584	4	0	0	4	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0019	3590	3	3	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0020	3586	3	0	1	1	1	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0021	3593	3	2	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0022	3587	3	0	1	1	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0023	3587	3	0	0	1	0	2	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0024	3581	3	3	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0025	3581	3	1	1	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0026	3579	3	1	0	2	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0027	3581	3	0	0	3	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0028	3581	3	3	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803