JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TET2_chr4_105141876_105284803	0/0	t0029	3589	2	1	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0030	3582	2	1	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0031	3582	2	0	0	2	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0032	3596	2	1	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0033	3594	2	2	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0034	3599	2	1	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0035	3591	2	2	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0036	3583	2	2	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0037	3580	2	0	1	0	1	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0038	3576	2	1	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0039	3585	2	0	0	2	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0040	3581	2	2	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0041	3591	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0042	3594	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0043	3579	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0044	3587	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0045	3581	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0046	3577	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0047	3579	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0048	3577	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0049	3589	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0050	3602	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0051	3597	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0052	3594	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0053	3590	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0054	3590	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0055	3588	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0056	3593	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0057	3596	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0058	3603	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0059	3593	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0060	3591	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0061	3589	1	0	0	0	1	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0062	3584	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0063	3581	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0064	3590	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0065	3588	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0066	3588	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0067	3586	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0068	3584	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0069	3631	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0070	3602	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0071	3600	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0072	3598	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0073	3602	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0074	3604	1	0	0	0	1	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0075	3606	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0076	3612	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0077	3601	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0078	3595	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803