JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TET2_chr4_105141876_105284803	0/0	t0079	3593	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0080	3589	1	0	0	0	1	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0081	3587	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0082	3585	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0083	3583	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0084	3583	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0085	3582	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0086	3581	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0087	3580	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0088	3577	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0089	3585	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0090	3600	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0091	3598	1	0	0	0	0	1	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0092	3592	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0093	3590	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0094	3582	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0095	3579	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0096	3578	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0097	3578	1	0	0	0	1	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0098	3584	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0099	3598	1	0	1	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0100	3589	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0101	3597	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0102	3601	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0103	3594	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0104	3586	1	0	0	1	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0105	3585	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0106	3583	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0107	3583	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET2_chr4_105141876_105284803	0/0	t0108	3594	1	1	0	0	0	0	copy fasta	TET2	chr4	105141876	105284803
TET3_chr2_73979910_74113176	0/1	t0001	6670	66	9	18	22	6	10	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0002	6670	25	6	4	8	4	3	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0003	6670	22	3	5	14	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0004	6669	19	0	4	9	2	4	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0005	6670	18	4	7	5	0	2	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0006	6670	12	0	2	10	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0007	6670	8	0	1	7	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0008	6670	6	2	4	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0009	6669	4	0	0	4	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0010	6667	4	4	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0011	6671	3	3	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0012	6668	3	3	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0013	6667	3	2	1	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0014	6668	3	3	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0015	6674	2	2	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0016	6670	2	0	1	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0017	6669	2	2	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0018	6670	2	2	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0019	6673	2	1	1	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0020	6669	2	2	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176