JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TET3_chr2_73979910_74113176	0/0	t0021	6670	2	2	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0022	6670	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0023	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0024	6669	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0025	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0026	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0027	6668	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0028	6659	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0029	6667	1	0	1	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0030	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0031	6670	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0032	6670	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0033	6668	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0034	6669	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0035	6668	1	0	1	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0036	6670	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0037	6670	1	0	1	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0038	6669	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0039	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0040	6670	1	0	0	0	0	1	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0041	6670	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0042	6669	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0043	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0044	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0045	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0046	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0047	6670	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0048	6659	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0049	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0050	6667	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0051	6669	1	0	0	0	0	1	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0052	6669	1	0	1	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0053	6669	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0054	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0055	6670	1	0	0	0	0	1	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0056	6674	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0057	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0058	6723	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0059	6724	1	0	0	1	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0060	6649	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	1/0	t0061	6673	1	0	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0062	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TET3_chr2_73979910_74113176	0/0	t0063	6670	1	1	0	0	0	0	copy fasta	TET3	chr2	73979910	74113176
TEX101_chr19_43409890_43423597	1/1	t0001	389	409	93	76	178	18	42	copy fasta	TEX101	chr19	43409890	43423597
TEX101_chr19_43409890_43423597	0/0	t0002	389	3	3	0	0	0	0	copy fasta	TEX101	chr19	43409890	43423597
TEX10_chr9_100297084_100357942	1/1	t0001	288	244	87	61	64	12	18	copy fasta	TEX10	chr9	100297084	100357942
TEX10_chr9_100297084_100357942	0/0	t0002	288	2	1	1	0	0	0	copy fasta	TEX10	chr9	100297084	100357942
TEX11_chrX_70523940_70913711	1/1	t0001	235	229	74	35	87	7	24	copy fasta	TEX11	chrX	70523940	70913711
TEX12_chr11_112162372_112177556	1/1	t0001	773	238	61	56	95	9	15	copy fasta	TEX12	chr11	112162372	112177556
TEX12_chr11_112162372_112177556	0/0	t0002	773	149	29	26	68	5	21	copy fasta	TEX12	chr11	112162372	112177556