JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEX12_chr11_112162372_112177556	0/0	t0003	773	1	0	0	1	0	0	copy fasta	TEX12	chr11	112162372	112177556
TEX13A_chrX_105213929_105225694	1/1	t0001	168	299	71	47	134	13	32	copy fasta	TEX13A	chrX	105213929	105225694
TEX13A_chrX_105213929_105225694	0/0	t0002	168	1	1	0	0	0	0	copy fasta	TEX13A	chrX	105213929	105225694
TEX13B_chrX_107975864_107987370	0/0	t0000	0	1	1	0	0	0	0	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	1/1	t0001	310	260	60	52	106	12	28	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	0/0	t0002	310	50	15	6	28	1	0	copy fasta	TEX13B	chrX	107975864	107987370
TEX13B_chrX_107975864_107987370	0/0	t0003	310	2	2	0	0	0	0	copy fasta	TEX13B	chrX	107975864	107987370
TEX13C_chrX_125314871_125330214	1/1	t0001	1784	204	30	36	99	10	27	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0002	1784	34	3	4	24	0	3	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0003	1784	33	30	3	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0004	1773	9	6	3	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0005	1784	6	0	0	6	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0006	1784	6	3	3	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0007	1784	2	0	0	0	2	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0008	1784	2	0	0	0	0	2	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0009	1784	1	0	1	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0010	1784	1	0	0	1	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0011	1784	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0012	1784	1	0	0	0	1	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0013	1784	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0014	1773	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13C_chrX_125314871_125330214	0/0	t0015	1772	1	1	0	0	0	0	copy fasta	TEX13C	chrX	125314871	125330214
TEX13D_chrX_124327660_124341863	0/0	t0001	2060	161	12	33	91	4	21	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0002	2060	69	11	12	34	3	9	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0003	2060	29	23	6	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	1/1	t0004	2060	27	10	4	6	4	1	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0005	2060	9	6	0	2	0	1	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0006	2060	8	5	0	3	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0007	2060	3	0	2	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0008	2060	3	0	0	3	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0009	2060	2	2	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0010	2060	2	0	2	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0011	2060	2	0	0	0	0	2	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0012	2060	2	0	0	2	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0013	2060	2	0	0	2	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0014	2033	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0015	2035	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0016	2060	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0017	2060	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0018	2060	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0019	2060	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0020	2060	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0021	2058	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0022	2060	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0023	2060	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0024	2059	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0025	2060	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0026	2059	1	0	0	1	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX13D_chrX_124327660_124341863	0/0	t0027	2060	1	1	0	0	0	0	copy fasta	TEX13D	chrX	124327660	124341863
TEX14_chr17_58551678_58697045	1/1	t0001	441	323	88	64	117	14	38	copy fasta	TEX14	chr17	58551678	58697045