JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEX14_chr17_58551678_58697045	0/0	t0002	441	1	0	0	1	0	0	copy fasta	TEX14	chr17	58551678	58697045
TEX15_chr8_30826544_30918008	1/1	t0001	1958	214	73	38	55	10	36	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0002	1958	22	0	0	22	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0003	1958	17	7	6	3	0	1	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0004	1958	9	0	0	9	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0005	1958	8	0	3	5	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0006	1958	7	0	6	0	0	1	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0007	1958	6	0	5	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0008	1958	3	3	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0009	1958	2	2	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0010	1958	1	0	1	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0011	1958	1	0	0	1	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0012	1958	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0013	1958	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0014	1958	1	0	1	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX15_chr8_30826544_30918008	0/0	t0015	1958	1	1	0	0	0	0	copy fasta	TEX15	chr8	30826544	30918008
TEX19_chr17_82354247_82368775	1/0	t0001	1441	181	44	32	83	10	11	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/1	t0002	1441	152	28	29	67	4	23	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0003	1441	14	2	3	7	0	2	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0004	1441	10	10	0	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0005	1441	7	6	0	1	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0006	1441	4	0	4	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0007	1441	4	0	0	4	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0008	1441	2	0	0	0	2	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0009	1441	1	1	0	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0010	1441	1	1	0	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0011	1441	1	0	0	1	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0012	1441	1	0	1	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0013	1441	1	0	0	1	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX19_chr17_82354247_82368775	0/0	t0014	1441	1	0	1	0	0	0	copy fasta	TEX19	chr17	82354247	82368775
TEX22_chr14_105393538_105418859	0/1	t0001	2164	255	29	58	113	16	38	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0002	2164	22	19	3	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0003	2164	13	12	1	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0004	2165	11	3	1	7	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0005	2164	8	8	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0006	2164	8	0	0	8	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0007	2164	7	0	7	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0008	2167	6	0	0	5	0	1	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0009	2164	6	1	3	0	0	2	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0010	2164	6	5	1	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	1/0	t0011	2164	4	3	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0012	2164	3	3	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0013	2164	2	0	0	2	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0014	2167	2	0	0	1	0	1	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0015	2164	2	1	1	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0016	2164	1	0	0	1	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0017	2164	1	0	1	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0018	2164	1	0	1	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0019	2164	1	0	1	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0020	2164	1	0	0	1	0	0	copy fasta	TEX22	chr14	105393538	105418859