JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEX22_chr14_105393538_105418859	0/0	t0021	2141	1	1	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0022	2164	1	0	0	1	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0023	2164	1	1	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0024	2164	1	0	0	1	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0025	2164	1	1	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0026	2164	1	1	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0027	2164	1	1	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX22_chr14_105393538_105418859	0/0	t0028	2164	1	1	0	0	0	0	copy fasta	TEX22	chr14	105393538	105418859
TEX261_chr2_70980942_70999873	1/0	t0001	2775	144	13	28	85	4	13	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/1	t0002	2775	82	10	9	47	3	12	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0003	2775	52	8	7	29	3	5	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0004	2775	31	0	3	17	0	11	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0005	2775	27	0	19	0	1	7	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0006	2775	17	9	4	4	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0007	2775	12	11	1	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0008	2778	9	8	1	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0009	2775	9	7	1	0	0	1	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0010	2769	9	9	0	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0011	2775	5	0	2	0	3	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0012	2775	4	4	0	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0013	2775	4	3	1	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0014	2778	3	3	0	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0015	2775	3	3	0	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0016	2775	3	0	0	3	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0017	2775	2	2	0	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0018	2775	2	2	0	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0019	2778	1	1	0	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0020	2778	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0021	2775	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0022	2775	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0023	2775	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0024	2775	1	0	0	0	0	1	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0025	2775	1	1	0	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0026	2775	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0027	2775	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0028	2775	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0029	2775	1	0	1	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0030	2775	1	0	1	0	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0031	2769	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX261_chr2_70980942_70999873	0/0	t0032	2659	1	0	0	1	0	0	copy fasta	TEX261	chr2	70980942	70999873
TEX264_chr3_51666252_51709323	0/0	t0001	379	256	65	43	116	8	24	copy fasta	TEX264	chr3	51666252	51709323
TEX264_chr3_51666252_51709323	1/1	t0002	379	35	3	14	10	3	3	copy fasta	TEX264	chr3	51666252	51709323
TEX264_chr3_51666252_51709323	0/0	t0003	379	8	1	5	0	1	1	copy fasta	TEX264	chr3	51666252	51709323
TEX264_chr3_51666252_51709323	0/0	t0004	379	1	1	0	0	0	0	copy fasta	TEX264	chr3	51666252	51709323
TEX26_chr13_30927656_30980500	1/1	t0001	654	405	87	72	182	16	46	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	t0002	654	5	4	1	0	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	t0003	654	1	0	1	0	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	t0004	654	1	1	0	0	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	t0005	654	1	1	0	0	0	0	copy fasta	TEX26	chr13	30927656	30980500
TEX26_chr13_30927656_30980500	0/0	t0006	654	1	1	0	0	0	0	copy fasta	TEX26	chr13	30927656	30980500