JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEX44_chr2_231587864_231599276	0/0	t0003	226	1	0	0	1	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	t0004	226	1	1	0	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX44_chr2_231587864_231599276	0/0	t0005	226	1	0	1	0	0	0	copy fasta	TEX44	chr2	231587864	231599276
TEX45_chr19_7492548_7513450	1/0	t0001	173	324	78	48	152	10	35	copy fasta	TEX45	chr19	7492548	7513450
TEX45_chr19_7492548_7513450	0/1	t0002	179	112	18	28	46	8	11	copy fasta	TEX45	chr19	7492548	7513450
TEX46_chr1_23005834_23020852	1/1	t0001	147	403	75	75	197	12	42	copy fasta	TEX46	chr1	23005834	23020852
TEX46_chr1_23005834_23020852	0/0	t0002	147	29	23	6	0	0	0	copy fasta	TEX46	chr1	23005834	23020852
TEX46_chr1_23005834_23020852	0/0	t0003	147	1	0	1	0	0	0	copy fasta	TEX46	chr1	23005834	23020852
TEX46_chr1_23005834_23020852	0/0	t0004	147	1	0	0	1	0	0	copy fasta	TEX46	chr1	23005834	23020852
TEX47_chr7_88789106_88800737	1/1	t0001	278	238	45	48	105	13	25	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	t0002	278	102	16	12	67	0	7	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	t0003	278	65	19	16	23	4	3	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	t0004	279	38	8	2	18	1	9	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	t0005	278	6	6	0	0	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	t0006	279	1	0	0	1	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	t0007	278	1	0	1	0	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX47_chr7_88789106_88800737	0/0	t0008	279	1	0	1	0	0	0	copy fasta	TEX47	chr7	88789106	88800737
TEX48_chr9_114661434_114687192	0/1	t0001	472	176	47	43	57	6	22	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	1/0	t0002	472	118	36	13	48	6	14	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	t0003	472	74	2	11	60	0	1	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	t0004	472	43	4	2	30	0	7	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	t0005	472	8	3	1	2	0	2	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	t0006	472	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	t0007	472	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX48_chr9_114661434_114687192	0/0	t0008	472	1	0	0	1	0	0	copy fasta	TEX48	chr9	114661434	114687192
TEX49_chr12_48722435_48770790	1/1	t0001	182	308	82	66	106	14	38	copy fasta	TEX49	chr12	48722435	48770790
TEX49_chr12_48722435_48770790	0/0	t0002	182	11	0	0	10	0	1	copy fasta	TEX49	chr12	48722435	48770790
TEX49_chr12_48722435_48770790	0/0	t0003	182	2	0	0	2	0	0	copy fasta	TEX49	chr12	48722435	48770790
TEX49_chr12_48722435_48770790	0/0	t0004	182	1	0	0	0	0	1	copy fasta	TEX49	chr12	48722435	48770790
TEX50_chr1_173630338_173642130	1/0	t0001	279	183	11	55	76	7	33	copy fasta	TEX50	chr1	173630338	173642130
TEX50_chr1_173630338_173642130	0/1	t0002	279	97	14	13	61	5	3	copy fasta	TEX50	chr1	173630338	173642130
TEX50_chr1_173630338_173642130	0/0	t0003	279	61	3	1	49	2	6	copy fasta	TEX50	chr1	173630338	173642130
TEX50_chr1_173630338_173642130	0/0	t0004	279	56	53	3	0	0	0	copy fasta	TEX50	chr1	173630338	173642130
TEX50_chr1_173630338_173642130	0/0	t0005	279	7	7	0	0	0	0	copy fasta	TEX50	chr1	173630338	173642130
TEX51_chr2_126893890_126907097	1/1	t0001	258	369	75	65	178	15	34	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	t0002	258	16	3	7	0	1	5	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	t0003	258	10	10	0	0	0	0	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	t0004	258	1	0	0	0	0	1	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	t0005	258	1	0	0	1	0	0	copy fasta	TEX51	chr2	126893890	126907097
TEX51_chr2_126893890_126907097	0/0	t0006	258	1	0	0	1	0	0	copy fasta	TEX51	chr2	126893890	126907097
TEX52_chr12_2844046_2862039	1/1	t0001	199	431	94	78	196	14	47	copy fasta	TEX52	chr12	2844046	2862039
TEX52_chr12_2844046_2862039	0/0	t0002	199	3	0	0	0	0	3	copy fasta	TEX52	chr12	2844046	2862039
TEX53_chr9_114651304_114662805	1/1	t0001	257	283	71	46	123	11	30	copy fasta	TEX53	chr9	114651304	114662805
TEX53_chr9_114651304_114662805	0/0	t0002	257	96	14	22	47	3	10	copy fasta	TEX53	chr9	114651304	114662805
TEX53_chr9_114651304_114662805	0/0	t0003	257	11	10	1	0	0	0	copy fasta	TEX53	chr9	114651304	114662805
TEX53_chr9_114651304_114662805	0/0	t0004	257	6	0	0	4	0	2	copy fasta	TEX53	chr9	114651304	114662805
TEX53_chr9_114651304_114662805	0/0	t0005	257	2	0	0	2	0	0	copy fasta	TEX53	chr9	114651304	114662805
TEX53_chr9_114651304_114662805	0/0	t0006	257	1	0	1	0	0	0	copy fasta	TEX53	chr9	114651304	114662805
TEX53_chr9_114651304_114662805	0/0	t0007	257	1	1	0	0	0	0	copy fasta	TEX53	chr9	114651304	114662805
TEX54_chr11_62827321_62837841	1/1	t0001	147	411	91	65	193	16	44	copy fasta	TEX54	chr11	62827321	62837841