JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TEX54_chr11_62827321_62837841	0/0	t0002	147	2	1	1	0	0	0	copy fasta	TEX54	chr11	62827321	62837841
TEX54_chr11_62827321_62837841	0/0	t0003	147	1	0	0	1	0	0	copy fasta	TEX54	chr11	62827321	62837841
TEX55_chr3_119141165_119156456	1/1	t0001	190	411	92	64	200	14	39	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	t0002	190	54	2	16	29	2	5	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	t0003	190	2	2	0	0	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX55_chr3_119141165_119156456	0/0	t0004	190	1	0	0	1	0	0	copy fasta	TEX55	chr3	119141165	119156456
TEX9_chr15_56360426_56435154	0/0	t0001	1736	105	13	9	71	1	11	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0002	1736	88	11	27	36	7	7	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/1	t0003	1736	72	5	16	37	5	8	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0004	1736	37	9	0	24	1	3	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0005	1736	13	0	10	1	0	2	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0006	1736	12	12	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0007	1736	12	10	2	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0008	1736	8	8	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0009	1736	6	6	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0010	1736	6	6	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0011	1740	3	2	1	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0012	1736	2	2	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0013	1736	2	2	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0014	26	1	0	0	1	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0015	1736	1	0	0	1	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0016	1736	1	1	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0017	1736	1	0	1	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0018	1736	1	0	0	0	0	1	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0019	1736	1	0	0	1	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0020	1736	1	1	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0021	1736	1	1	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0022	1736	1	1	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0023	1736	1	1	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0024	1736	1	0	0	1	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0025	1736	1	0	0	1	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	1/0	t0026	1736	1	0	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TEX9_chr15_56360426_56435154	0/0	t0027	1740	1	1	0	0	0	0	copy fasta	TEX9	chr15	56360426	56435154
TFAM_chr10_58380410_58404220	0/0	t0001	4285	163	8	30	106	2	17	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0002	4289	69	1	7	60	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0003	4287	68	19	13	27	4	5	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0004	4285	19	6	7	0	5	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0005	4283	14	12	2	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0006	4285	12	1	5	0	5	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0007	4291	9	7	1	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0008	4287	7	7	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0009	4285	6	1	4	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0010	4285	5	5	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0011	4285	4	4	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0012	4279	4	0	0	4	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0013	4279	4	4	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0014	4283	3	3	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0015	4283	3	2	0	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0016	4287	3	3	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0017	4293	3	3	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220