JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFAM_chr10_58380410_58404220	0/0	t0018	4287	3	3	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0019	4287	2	0	1	1	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0020	4285	2	0	1	0	1	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0021	4285	2	0	0	0	0	2	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0022	4285	2	0	0	0	0	2	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0023	4287	2	0	1	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0024	4285	1	1	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0025	4289	1	0	0	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0026	4289	1	0	0	1	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0027	4289	1	0	0	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0028	4293	1	0	0	1	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0029	4289	1	0	1	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0030	4291	1	1	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0031	4289	1	0	0	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0032	4287	1	1	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0033	4285	1	1	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0034	4285	1	0	0	1	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0035	4285	1	0	0	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0036	4285	1	0	1	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0037	4285	1	0	1	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0038	4293	1	0	0	1	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0039	4285	1	0	0	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0040	4287	1	0	0	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0041	4285	1	0	0	0	0	1	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0042	4287	1	0	0	0	1	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0043	4285	1	1	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0044	4287	1	0	0	1	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0045	4289	1	1	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0046	4287	1	0	1	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0047	4287	1	0	0	1	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAM_chr10_58380410_58404220	0/0	t0048	4285	1	1	0	0	0	0	copy fasta	TFAM	chr10	58380410	58404220
TFAP2A_chr6_10391677_10420074	1/1	t0001	1824	161	18	40	64	10	27	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0002	1826	60	9	10	41	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0003	1826	27	23	3	1	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0004	1825	26	2	1	18	1	4	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0005	1823	19	0	0	19	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0006	1824	12	1	11	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0007	1825	8	8	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0008	1825	8	8	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0009	1824	7	6	1	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0010	1824	7	7	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0011	1822	6	4	2	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0012	1825	5	0	0	5	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0013	1827	3	3	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0014	1822	3	2	1	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0015	1823	2	2	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0016	1824	1	0	0	1	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0017	1825	1	0	0	1	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0018	1825	1	0	1	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0019	1824	1	0	0	1	0	0	copy fasta	TFAP2A	chr6	10391677	10420074