JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFAP2A_chr6_10391677_10420074	0/0	t0020	1825	1	0	0	0	0	1	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0021	1825	1	1	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0022	1823	1	0	0	1	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0023	1824	1	0	0	0	1	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0024	1825	1	1	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0025	1822	1	1	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0026	1825	1	1	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0027	1826	1	1	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0028	1825	1	1	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2A_chr6_10391677_10420074	0/0	t0029	1826	1	1	0	0	0	0	copy fasta	TFAP2A	chr6	10391677	10420074
TFAP2B_chr6_50813871_50852619	0/1	t0001	4247	94	5	16	59	3	10	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0002	4248	68	17	6	38	1	6	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0003	4247	64	9	20	22	3	10	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0004	4250	15	0	4	8	0	3	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	1/0	t0005	4249	14	0	5	0	5	3	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0006	4249	14	1	7	1	0	5	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0007	4248	13	13	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0008	4249	9	8	1	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0009	4250	7	6	1	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0010	4251	7	0	0	6	0	1	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0011	4245	6	0	0	5	0	1	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0012	4247	5	0	0	5	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0013	4248	5	0	3	0	1	1	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0014	4247	4	0	0	4	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0015	4246	4	2	0	2	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0016	4251	4	4	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0017	4247	3	0	3	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0018	4251	3	3	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0019	4245	3	3	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0020	4249	2	1	1	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0021	4248	2	0	0	0	0	2	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0022	4247	2	2	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0023	4249	2	2	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0024	4250	2	2	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0025	4250	2	0	0	2	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0026	4247	2	0	0	0	2	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0027	4248	1	0	1	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0028	4247	1	0	1	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0029	4247	1	0	0	1	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0030	4248	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0031	4247	1	0	0	1	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0032	4247	1	0	0	1	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0033	4247	1	0	1	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0034	4247	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0035	4247	1	0	0	1	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0036	4248	1	0	1	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0037	4248	1	0	1	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0038	4247	1	0	0	1	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0039	4246	1	0	0	1	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0040	4248	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619