JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFAP2B_chr6_50813871_50852619	0/0	t0041	4249	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0042	4249	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0043	4248	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0044	4247	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0045	4248	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0046	4249	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0047	4247	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0048	4246	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0049	4249	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0050	4249	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0051	4248	1	0	0	0	1	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2B_chr6_50813871_50852619	0/0	t0052	4245	1	1	0	0	0	0	copy fasta	TFAP2B	chr6	50813871	50852619
TFAP2C_chr20_56624306_56644283	1/1	t0001	1510	167	31	46	51	8	29	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0002	1511	101	11	13	70	1	6	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0003	1510	15	13	2	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0004	1509	13	0	0	12	0	1	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0005	1511	11	5	1	0	3	2	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0006	1510	9	8	1	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0007	1510	8	3	1	1	0	3	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0008	1510	6	5	1	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0009	1512	6	4	0	2	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0010	1510	3	2	1	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0011	1509	2	1	1	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0012	1509	2	2	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0013	1512	2	2	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0014	1511	2	2	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0015	1510	1	0	0	0	0	1	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0016	1510	1	0	1	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0017	1511	1	1	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0018	1512	1	1	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0019	1510	1	1	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0020	1511	1	0	0	1	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0021	1511	1	1	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0022	1512	1	0	0	1	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0023	1510	1	1	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0024	1510	1	0	0	0	1	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0025	1510	1	0	0	0	1	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0026	1509	1	1	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2C_chr20_56624306_56644283	0/0	t0027	1511	1	1	0	0	0	0	copy fasta	TFAP2C	chr20	56624306	56644283
TFAP2D_chr6_50708526_50778033	1/0	t0001	700	187	50	41	62	8	25	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/1	t0002	700	75	4	14	47	2	7	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	t0003	699	56	36	2	14	1	3	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	t0004	701	13	0	6	2	3	2	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	t0005	700	1	0	0	1	0	0	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	t0006	700	1	0	0	0	0	1	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2D_chr6_50708526_50778033	0/0	t0007	700	1	0	1	0	0	0	copy fasta	TFAP2D	chr6	50708526	50778033
TFAP2E_chr1_35568314_35600328	1/1	t0001	917	281	72	50	116	14	27	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	t0002	917	60	16	9	33	0	2	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	t0003	917	16	3	1	10	0	2	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	t0004	917	5	5	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328