JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFAP2E_chr1_35568314_35600328	0/0	t0005	917	3	1	2	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	t0006	917	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	t0007	917	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	t0008	917	1	0	0	1	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	t0009	917	1	1	0	0	0	0	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP2E_chr1_35568314_35600328	0/0	t0010	917	1	0	0	0	0	1	copy fasta	TFAP2E	chr1	35568314	35600328
TFAP4_chr16_4252186_4278023	0/0	t0001	1140	69	1	13	51	0	4	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0002	1138	31	4	8	15	0	4	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0003	1141	25	2	1	12	3	7	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0004	1142	21	0	4	16	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0005	1141	16	1	5	10	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0006	1143	13	2	1	7	0	3	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0007	1142	11	4	2	0	3	2	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0008	1140	11	2	4	1	2	2	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0009	1144	10	0	0	9	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0010	1145	9	2	3	1	2	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0011	1149	8	3	1	4	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0012	1147	7	6	0	0	1	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/1	t0013	1145	7	1	4	0	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0014	1144	6	1	1	1	1	2	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0015	1143	6	1	4	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0016	1136	6	6	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0017	1145	5	2	3	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0018	1139	5	3	1	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0019	1140	5	0	0	5	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0020	1136	5	2	0	3	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0021	1151	4	4	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0022	1148	4	0	3	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0023	1146	4	0	0	3	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0024	1147	4	2	0	1	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0025	1146	4	1	0	0	0	3	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0026	1138	4	3	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0027	1136	4	1	0	3	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0028	1152	3	1	2	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	1/0	t0029	1147	3	0	1	0	1	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0030	1144	3	2	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0031	1142	3	3	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0032	1135	3	3	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0033	1143	3	1	0	2	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0034	1141	3	1	1	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0035	1137	3	0	0	3	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0036	1141	3	0	1	2	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0037	1150	2	0	1	0	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0038	1137	2	2	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0039	1144	2	0	0	2	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0040	1140	2	0	2	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0041	1142	2	1	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0042	1138	2	2	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0043	1139	2	0	0	2	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0044	1134	2	1	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023