Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRD2_chr6_32963594_32986501	0/0	t0068	2551	1	0	0	0	0	1	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0069	2550	1	1	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0070	2550	1	0	1	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0071	2553	1	0	1	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0072	2552	1	1	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	t0073	2549	1	0	1	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD3OS_chr9_134020481_134036587	0/1	t0001	5428	74	11	19	36	3	4	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0002	5427	64	7	7	36	1	13	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0003	5427	17	7	7	1	2	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0004	5429	16	2	1	9	0	4	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0005	5427	15	8	0	0	1	6	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0006	5427	10	8	2	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0007	5428	9	9	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0008	5428	6	0	2	4	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0009	5425	6	0	2	0	3	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0010	5427	6	2	3	0	1	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0011	5428	5	0	2	2	0	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0012	5428	5	0	0	5	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0013	5428	5	0	3	0	1	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0014	5428	4	4	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0015	5428	3	3	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0016	5421	3	3	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0017	5428	3	0	0	0	1	2	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0018	5427	3	0	0	3	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	1/0	t0019	5428	3	2	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0020	5426	3	2	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0021	5427	2	0	0	2	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0022	5429	2	0	0	2	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0023	5426	2	0	0	1	0	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0024	5427	2	2	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0025	5428	2	1	0	0	0	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0026	5426	2	2	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0027	5427	2	2	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0028	5428	2	2	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0029	5428	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0030	5428	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0031	5427	1	0	0	0	0	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0032	5427	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0033	5428	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0034	5427	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0035	5427	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0036	5427	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0037	5427	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0038	5429	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0039	5427	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0040	5429	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0041	5430	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0042	5424	1	0	0	0	1	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0043	5426	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0044	5427	1	0	0	0	0	1	copy fasta	BRD3OS	chr9	134020481	134036587