JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFAP4_chr16_4252186_4278023	0/0	t0045	1143	2	0	0	2	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0046	1179	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0047	1162	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0048	1162	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0049	1157	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0050	1155	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0051	1152	1	0	1	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0052	1153	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0053	1150	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0054	1151	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0055	1148	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0056	1149	1	0	0	0	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0057	1149	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0058	1149	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0059	1146	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0060	1147	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0061	1146	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0062	1146	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0063	1148	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0064	1149	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0065	1145	1	0	1	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0066	1164	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0067	1146	1	0	1	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0068	1147	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0069	1145	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0070	1143	1	0	0	0	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0071	1143	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0072	1142	1	0	1	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0073	1134	1	0	1	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0074	1140	1	0	0	0	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0075	1140	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0076	1142	1	0	1	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0077	1139	1	0	1	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0078	1143	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0079	1140	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0080	1140	1	0	0	0	1	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0081	1140	1	0	0	0	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0082	1138	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0083	1140	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0084	1138	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0085	1141	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0086	1137	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0087	1138	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0088	1136	1	0	1	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0089	1139	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0090	1135	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0091	1135	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0092	1137	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0093	1132	1	0	0	0	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0094	1128	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023