JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFAP4_chr16_4252186_4278023	0/0	t0095	1122	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0096	1123	1	1	0	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0097	1143	1	0	0	1	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0098	1144	1	0	1	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0099	1142	1	0	0	0	0	1	copy fasta	TFAP4	chr16	4252186	4278023
TFAP4_chr16_4252186_4278023	0/0	t0100	1141	1	0	1	0	0	0	copy fasta	TFAP4	chr16	4252186	4278023
TFB1M_chr6_155251134_155319484	0/0	t0001	1753	106	13	22	56	2	13	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0002	1756	45	1	2	36	0	6	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0003	1755	30	1	12	13	2	2	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0004	1755	26	14	7	1	2	2	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	1/1	t0005	1759	26	8	12	1	3	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0006	1755	16	9	5	1	1	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0007	1755	9	0	0	9	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0008	1753	8	0	0	8	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0009	1754	7	2	1	2	0	2	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0010	1759	7	2	0	2	0	3	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0011	1756	6	0	0	6	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0012	1756	6	6	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0013	1753	5	3	2	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0014	1756	5	4	1	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0015	1756	3	0	0	3	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0016	1757	3	1	0	2	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0017	1753	3	2	1	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0018	1755	3	2	1	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0019	1760	3	0	3	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0020	1754	2	2	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0021	1755	2	0	0	0	0	2	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0022	1760	2	0	0	1	0	1	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0023	1756	2	2	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0024	1753	2	2	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0025	1756	2	2	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0026	1754	2	2	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0027	1758	2	0	0	0	0	2	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0028	1753	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0029	1756	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0030	1755	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0031	1753	1	0	0	1	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0032	1754	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0033	1754	1	0	0	1	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0034	1753	1	0	0	0	0	1	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0035	1756	1	0	0	0	0	1	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0036	1755	1	0	0	1	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0037	1755	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0038	1756	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0039	1755	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0040	1756	1	0	1	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0041	1760	1	0	0	0	0	1	copy fasta	TFB1M	chr6	155251134	155319484
TFB1M_chr6_155251134_155319484	0/0	t0042	1754	1	1	0	0	0	0	copy fasta	TFB1M	chr6	155251134	155319484
TFB2M_chr1_246535561_246571261	1/1	t0001	594	384	77	63	193	13	36	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	t0002	593	46	17	16	4	4	5	copy fasta	TFB2M	chr1	246535561	246571261