JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFB2M_chr1_246535561_246571261	0/0	t0003	594	8	0	0	7	1	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	t0004	594	4	3	1	0	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	t0005	593	3	0	2	0	0	1	copy fasta	TFB2M	chr1	246535561	246571261
TFB2M_chr1_246535561_246571261	0/0	t0006	594	1	1	0	0	0	0	copy fasta	TFB2M	chr1	246535561	246571261
TFCP2L1_chr2_121211587_121290202	0/0	t0001	7848	57	4	10	40	0	3	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/1	t0002	7848	54	13	11	19	4	6	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0003	7848	53	12	7	23	2	9	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	1/0	t0004	7848	29	6	3	19	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0005	7844	24	1	12	10	0	1	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0006	7844	23	0	2	17	1	3	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0007	7848	14	3	6	0	0	5	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0008	7844	6	0	2	0	2	2	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0009	7844	5	5	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0010	7849	5	5	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0011	7844	5	0	0	5	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0012	7848	5	5	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0013	7848	4	0	0	4	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0014	7844	4	0	0	4	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0015	7848	4	1	3	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0016	7848	3	2	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0017	7846	3	3	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0018	7844	3	0	0	3	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0019	7844	3	0	1	0	2	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0020	7848	2	0	0	0	0	2	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0021	7848	2	2	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0022	7848	2	0	0	2	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0023	7848	2	2	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0024	7848	2	0	0	0	1	1	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0025	7845	2	0	0	1	0	1	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0026	7846	2	2	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0027	7848	2	0	0	2	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0028	7848	2	2	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0029	7844	1	0	0	0	0	1	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0030	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0031	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0032	7846	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0033	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0034	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0035	7848	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0036	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0037	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0038	7848	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0039	7848	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0040	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0041	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0042	7848	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0043	7848	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0044	7847	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0045	7844	1	0	0	0	0	1	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0046	7848	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202